; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026088 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026088
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:28940240..28940563
RNA-Seq ExpressionLag0026088
SyntenyLag0026088
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1156Show/hide
Query:  TSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF
        T+DQ +R+M  L+ K F E N D K+ S V SRMKRKFS+ INTE SL VKP FII TNL ++G ++  DE+K F
Subjt:  TSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-1151.72Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSRMKRK S+ INTEGSL VKP FII TN  ++G ++  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-1151.69Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSR+KRK SI INTEGSL VKP FII TN  ++G ++  DE+K F
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.8e-1252.87Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSRMKRK S+ INTEGSL VKP FII TN  ++G +Q  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-1150.57Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ + VPSRMKRK S+ INTEGSL VKP FII TN  ++G ++  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein8.1e-1256Show/hide
Query:  TSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF
        T+DQ +R+M  L+ K F E N D K+ S V SRMKRKFS+ INTE SL VKP FII TNL ++G ++  DE+K F
Subjt:  TSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF

A0A5A7TQ06 Retrotransposon gag protein1.4e-1151.72Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSRMKRK S+ INTEGSL VKP FII TN  ++G ++  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

A0A5A7U974 Retrotransposon gag protein1.4e-1151.69Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSR+KRK SI INTEGSL VKP FII TN  ++G ++  DE+K F
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF

A0A5A7UI09 Retrotransposon gag protein1.8e-1150.57Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ + VPSRMKRK S+ INTEGSL VKP FII TN  ++G ++  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

A0A5A7VRG7 Retrotransposon gag protein4.7e-1252.87Show/hide
Query:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK
        H    S FD     T+DQ +R+M +L+ K F E N D K+ S VPSRMKRK S+ INTEGSL VKP FII TN  ++G +Q  DE+K
Subjt:  HIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGCGTCCACCTCCACTCGACCTTCATCTTTCAAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCAGTCTTTGACATCTATTTTTTGTCGACAAGCGATCAACC
TAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCGTCCCATCACGTATGAAGAGGAAGTTCTCTATTCTCA
TAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATTTCATTATCGTGACCAATCTTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGCGTCCACCTCCACTCGACCTTCATCTTTCAAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCAGTCTTTGACATCTATTTTTTGTCGACAAGCGATCAACC
TAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCGTCCCATCACGTATGAAGAGGAAGTTCTCTATTCTCA
TAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATTTCATTATCGTGACCAATCTTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA
Protein sequenceShow/hide protein sequence
MFGVHLHSTFIFQKAKCLHIEEKSVFDIYFLSTSDQPKRKMDNLEVKLFDEVNSDKKLQSSVPSRMKRKFSILINTEGSLKVKPNFIIVTNLTSQGSDQDHDEDKGF