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Lag0026097 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026097
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:29097609..29102986
RNA-Seq ExpressionLag0026097
SyntenyLag0026097
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]7.8e-3288Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        MLDRL  Y YYCFLDGYSGYNQI IAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++ VE+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

XP_038972405.1 uncharacterized protein LOC120104748 [Phoenix dactylifera]3.0e-3169.9Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE
        +L+RL  Y YYCFLDGYSGYNQI I+PEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++FVE+IME    D     SS D   D LS + +
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE

Query:  SLE
          E
Subjt:  SLE

XP_038976409.1 uncharacterized protein LOC113461320 [Phoenix dactylifera]3.0e-3169.9Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE
        +L+RL  Y YYCFLDGYSGYNQI I+PEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++FVE+IME    D     SS D   D LS + +
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE

Query:  SLE
          E
Subjt:  SLE

XP_038976653.1 uncharacterized protein LOC120107448 [Phoenix dactylifera]3.0e-3169.9Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE
        +L+RL  Y YYCFLDGYSGYNQI I+PEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++FVE+IME    D     SS D   D LS + +
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE

Query:  SLE
          E
Subjt:  SLE

XP_038978818.1 uncharacterized protein LOC120109140 [Phoenix dactylifera]3.0e-3169.9Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE
        +L+RL  Y YYCFLDGYSGYNQI I+PEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++FVE+IME    D     SS D   D LS + +
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME----DVECVVSSSDEVEDPLSSIGE

Query:  SLE
          E
Subjt:  SLE

TrEMBL top hitse value%identityAlignment
A0A6P6SU28 Reverse transcriptase9.3e-3181.33Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        +L+R+V Y +YCFLDG+SGYNQI IAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++++E+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

A0A6P6W3B7 Reverse transcriptase2.7e-3080Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        +L+R+  Y +YCFLDG+SGYNQI IAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++++E+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

A0A6P6X9H2 Reverse transcriptase2.7e-3080Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        +L+R+  Y +YCFLDG+SGYNQI IAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++++E+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

A0A6P6XAQ1 Reverse transcriptase1.2e-3084Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        M++RL  Y +YCFLDG+SGYNQIVIAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++F E+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

A0A6P6XBM5 uncharacterized protein LOC1137409692.7e-3080Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME
        +L+R+  Y +YCFLDG+SGYNQI IAPEDQEKTTFTCPYGT+AFRRMPFGLCNAPATFQRCMMAIF++++E+IME
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIME

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.0e-1037.5Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFV-EEIMEDVECVVSSSDEVEDPLSSIG
        +L +L R  Y+  +D   G++QI + PE   KT F+  +G Y + RMPFGL NAPATFQRCM  I    + +  +  ++ ++  S  +++ L S+G
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFV-EEIMEDVECVVSSSDEVEDPLSSIG

Q7DMA9 Peptidyl-prolyl cis-trans isomerase PASTICCINO13.9e-1042.27Show/hide
Query:  GKGIPTRHILGKSKMILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK
        G+G+P R +LG SKMILGLLEGIPTM KGE+AM  +K  M     H+  +       +C +S               E++D  KAK+ S+D GV KK
Subjt:  GKGIPTRHILGKSKMILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.7e-1037.62Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFAN--FVEEIMEDVECVVSSSDEVEDPLSSIGESL
        +L R+     +  LD +SGY+QI + P+D+ KT F  P G Y +  MPFGL NAP+TF R M   F +  FV   ++D+     S +E    L ++ E L
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFAN--FVEEIMEDVECVVSSSDEVEDPLSSIGESL

Query:  E
        +
Subjt:  E

Q93V85 WAT1-related protein At3g02690, chloroplastic3.2e-1248.96Show/hide
Query:  DVECVVSSSDEVEDPLSSIGESLELGISSDVVGGGGDGSVAILEKAWEFVVLVLPFFFWSTTMVALKEVLPRSGPFFVYVFHLIPVGFLLIAFAVF
        DVECV +  DE         E+   GI S     GG+G+        E+ VL+ PFFFW T MVA+KEVLP +GPFFV  F LIP G LL+AFAV+
Subjt:  DVECVVSSSDEVEDPLSSIGESLELGISSDVVGGGGDGSVAILEKAWEFVVLVLPFFFWSTTMVALKEVLPRSGPFFVYVFHLIPVGFLLIAFAVF

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.7e-1037.62Show/hide
Query:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFAN--FVEEIMEDVECVVSSSDEVEDPLSSIGESL
        +L R+     +  LD +SGY+QI + P+D+ KT F  P G Y +  MPFGL NAP+TF R M   F +  FV   ++D+     S +E    L ++ E L
Subjt:  MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFAN--FVEEIMEDVECVVSSSDEVEDPLSSIGESL

Query:  E
        +
Subjt:  E

Arabidopsis top hitse value%identityAlignment
AT3G02690.1 nodulin MtN21 /EamA-like transporter family protein2.3e-1348.96Show/hide
Query:  DVECVVSSSDEVEDPLSSIGESLELGISSDVVGGGGDGSVAILEKAWEFVVLVLPFFFWSTTMVALKEVLPRSGPFFVYVFHLIPVGFLLIAFAVF
        DVECV +  DE         E+   GI S     GG+G+        E+ VL+ PFFFW T MVA+KEVLP +GPFFV  F LIP G LL+AFAV+
Subjt:  DVECVVSSSDEVEDPLSSIGESLELGISSDVVGGGGDGSVAILEKAWEFVVLVLPFFFWSTTMVALKEVLPRSGPFFVYVFHLIPVGFLLIAFAVF

AT3G54010.1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein2.8e-1142.27Show/hide
Query:  GKGIPTRHILGKSKMILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK
        G+G+P R +LG SKMILGLLEGIPTM KGE+AM  +K  M     H+  +       +C +S               E++D  KAK+ S+D GV KK
Subjt:  GKGIPTRHILGKSKMILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK

AT3G54010.2 FKBP-type peptidyl-prolyl cis-trans isomerase family protein1.3e-0539.76Show/hide
Query:  MILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK
        MILGLLEGIPTM KGE+AM  +K  M     H+  +       +C +S               E++D  KAK+ S+D GV KK
Subjt:  MILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILS---------------EMIDSFKAKVISNDFGVTKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGATAGGTTGGTTAGGTATCCGTATTATTGTTTTCTGGATGGTTATTCGGGCTATAATCAAATTGTGATTGCGCCTGAAGACCAAGAGAAAACAACATTCACGTG
TCCCTATGGTACTTATGCTTTTCGGCGTATGCCATTTGGACTGTGTAATGCTCCAGCTACCTTTCAGCGTTGTATGATGGCCATATTTGCAAACTTTGTAGAAGAGATTA
TGGAGGATGTGGAGTGCGTGGTTTCATCGAGTGATGAAGTTGAAGATCCTTTGTCCTCAATTGGGGAGTCACTGGAATTAGGGATTTCATCTGATGTTGTTGGTGGTGGT
GGTGATGGCTCTGTGGCAATCTTGGAGAAAGCCTGGGAGTTCGTCGTGTTGGTTTTGCCATTTTTCTTTTGGAGTACGACTATGGTGGCACTGAAGGAGGTGCTTCCAAG
GTCTGGTCCTTTTTTCGTTTATGTCTTTCATCTTATACCTGTCGGTTTCCTTTTGATTGCCTTTGCTGTTTTTCTTTTGGGGTACGACTATGGTTGCGATGAAGGAGGTG
CTTCCAAGGATGCTATTGATTGCCCTGAATGCCATTTCATATTTTCAAATTGTTTGCTGAAGAGGTTGTCTATCACTGCACCATACGGACACTTGATGGATTTGTTGTTG
AATCCACTTGATCAGAATATGGAGTCTTCTTTTAACATATCAGGGAAGGGCATTCCAACAAGGCATATTTTAGGCAAAAGCAAAATGATACTGGGATTACTAGAAGGTAT
TCCAACAATGTTGAAAGGTGAAGTGGCTATGATAAACCTCAAATGCACTATGGCGGGGAGGATTGCCCACTTTCAGTCAGTAGCAGCTTCCCGAAGGAAGATGAACTGTA
TTTTGAGTGAGATGATAGATTCTTTTAAGGCCAAGGTCATAAGCAATGATTTTGGTGTCACGAAGAAGGATGATTGGGCCTTTGGACTTTTCCTACCATGTATTGTAAGC
GTCGAGACGCTTAGCAAGGCAGCGTCGCGACGCTGCCCTTTCTTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGCTTGGCAAGGCAGCGTCGCGACGCTACCCCT
TTTCCAGGCCTATAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGATAGGTTGGTTAGGTATCCGTATTATTGTTTTCTGGATGGTTATTCGGGCTATAATCAAATTGTGATTGCGCCTGAAGACCAAGAGAAAACAACATTCACGTG
TCCCTATGGTACTTATGCTTTTCGGCGTATGCCATTTGGACTGTGTAATGCTCCAGCTACCTTTCAGCGTTGTATGATGGCCATATTTGCAAACTTTGTAGAAGAGATTA
TGGAGGATGTGGAGTGCGTGGTTTCATCGAGTGATGAAGTTGAAGATCCTTTGTCCTCAATTGGGGAGTCACTGGAATTAGGGATTTCATCTGATGTTGTTGGTGGTGGT
GGTGATGGCTCTGTGGCAATCTTGGAGAAAGCCTGGGAGTTCGTCGTGTTGGTTTTGCCATTTTTCTTTTGGAGTACGACTATGGTGGCACTGAAGGAGGTGCTTCCAAG
GTCTGGTCCTTTTTTCGTTTATGTCTTTCATCTTATACCTGTCGGTTTCCTTTTGATTGCCTTTGCTGTTTTTCTTTTGGGGTACGACTATGGTTGCGATGAAGGAGGTG
CTTCCAAGGATGCTATTGATTGCCCTGAATGCCATTTCATATTTTCAAATTGTTTGCTGAAGAGGTTGTCTATCACTGCACCATACGGACACTTGATGGATTTGTTGTTG
AATCCACTTGATCAGAATATGGAGTCTTCTTTTAACATATCAGGGAAGGGCATTCCAACAAGGCATATTTTAGGCAAAAGCAAAATGATACTGGGATTACTAGAAGGTAT
TCCAACAATGTTGAAAGGTGAAGTGGCTATGATAAACCTCAAATGCACTATGGCGGGGAGGATTGCCCACTTTCAGTCAGTAGCAGCTTCCCGAAGGAAGATGAACTGTA
TTTTGAGTGAGATGATAGATTCTTTTAAGGCCAAGGTCATAAGCAATGATTTTGGTGTCACGAAGAAGGATGATTGGGCCTTTGGACTTTTCCTACCATGTATTGTAAGC
GTCGAGACGCTTAGCAAGGCAGCGTCGCGACGCTGCCCTTTCTTGTTGCCCAAGCCGCGTGCGCAGCAGCGTCGCGACGCTTGGCAAGGCAGCGTCGCGACGCTACCCCT
TTTCCAGGCCTATAAATAG
Protein sequenceShow/hide protein sequence
MLDRLVRYPYYCFLDGYSGYNQIVIAPEDQEKTTFTCPYGTYAFRRMPFGLCNAPATFQRCMMAIFANFVEEIMEDVECVVSSSDEVEDPLSSIGESLELGISSDVVGGG
GDGSVAILEKAWEFVVLVLPFFFWSTTMVALKEVLPRSGPFFVYVFHLIPVGFLLIAFAVFLLGYDYGCDEGGASKDAIDCPECHFIFSNCLLKRLSITAPYGHLMDLLL
NPLDQNMESSFNISGKGIPTRHILGKSKMILGLLEGIPTMLKGEVAMINLKCTMAGRIAHFQSVAASRRKMNCILSEMIDSFKAKVISNDFGVTKKDDWAFGLFLPCIVS
VETLSKAASRRCPFLLPKPRAQQRRDAWQGSVATLPLFQAYK