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Lag0026120 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026120
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:29845506..29846651
RNA-Seq ExpressionLag0026120
SyntenyLag0026120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-2263.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2263.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.1e-2263.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.9e-2262.26Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]6.8e-2261.32Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK S+ I T+GSL  KP++
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein8.7e-2363.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

A0A5A7TQ06 Retrotransposon gag protein1.5e-2263.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

A0A5D3BBF9 Gag protease polyprotein1.5e-2263.21Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

A0A5D3D209 Retrotransposon gag protein4.3e-2262.26Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D K+HS VPSRMKRK SV I TEGSL  KP+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

A0A5D3D5Q0 Gag protease polyprotein3.3e-2261.32Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV
        +SMA  EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK S+ I T+GSL  KP++
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL--KPQV

Query:  RCFTHP
          FT+P
Subjt:  RCFTHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTGCATTCCTTC
TCTTCAAGTTCGAAGGTTCTCACATGTTTCGCTGCAGTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCTGACGCCGCTTCGCGCTGTAGTTCCTTCCCTCCAAG
TTTGAAGGTTGTCACGCGCTTCGCTGACGCCGCTTCGCGCTGTAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACGCGCTTCACTCTGCAATTCCTTCCCCAAGTTCGAA
GGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCAAATTCGAAGGTTCTCACGCGCTTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTGCATTCCTTC
TCTTCAAGTTCGAAGGTTCTCACATGTTTCGCTGCAGTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCTGACGCCGCTTCGCGCTGTAGTTCCTTCCCTCCAAG
TTTGAAGGTTGTCACGCGCTTCGCTGACGCCGCTTCGCGCTGTAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACGCGCTTCACTCTGCAATTCCTTCCCCAAGTTCGAA
GGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCAAATTCGAAGGTTCTCACGCGCTTCGCTGA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKPQVRCFTHPKFVHSF
SSSSKVLTCFAAVLPPSSKVHTRFADAASRCSSFPPSLKVVTRFADAASRCSSFPPSSKVLTRFTLQFLPQVRRFSRASCSSFLKFEGSHALR