; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026139 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026139
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:30287275..30287925
RNA-Seq ExpressionLag0026139
SyntenyLag0026139
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.0e-1634.34Show/hide
Query:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSP
        MD WL + D  +  + +L A T W+IW DRN   HG S+     + +WI++Y + +  A   +  + P + ++      W+PP  +  KVN DAA  S+ 
Subjt:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSP

Query:  PSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLV
         STGLG IIR   G ++ A +  + +      AE+  I E + LA       ++VESDC +AI LV
Subjt:  PSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-1830.37Show/hide
Query:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWT
        ++ W  + +     +L L A+T W IW+DRN  +HG+ + P+  K  W+      FLD++S+ +  N   R   N    +  W P S    K+N DAA  
Subjt:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWT

Query:  SSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVY
         +  ST  G IIR S  ++V A++  V       +AE+  I EG+  A       + VESD   AI L+  +    G+ + W+  I      F+ + F +
Subjt:  SSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVY

Query:  TSRKKNGVADGITK
        +SR+ N  A G+ K
Subjt:  TSRKKNGVADGITK

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.6e-1631.5Show/hide
Query:  SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIR
        S SEL L  +T W++W+DR+  ++ + I     K  WI  Y + + +  ++     +P        ++ W PP G + K+N DAA   S   +G+G ++R
Subjt:  SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIR

Query:  VSMGNIVGASTFSVKIDY---KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVA
             IVGA      +D+   K P +A+++ I EG+SLA  LG   ++VE+D  +A+NL+  K+   GE   W+E I      F  + F +  R+ N VA
Subjt:  VSMGNIVGASTFSVKIDY---KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVA

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.6e-1631.37Show/hide
Query:  SELELIAVTSWSIWSDRNKKV-HGQSILPINT---KNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAII
        S+LEL+    WS W  RNK +  G+ + PI +     S +  +QR+      R+ +   +  +++ +   W+PP  N++KVNVDAA+ S   S G+GA+I
Subjt:  SELELIAVTSWSIWSDRNKKV-HGQSILPINT---KNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAII

Query:  RVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVADGI
        R S G IV A      +   A +AE   +  G+ LA+      +I+ESDC + + LV        E+   + AI +Q+  F  V+  +  R  N  A  +
Subjt:  RVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVADGI

Query:  TKRA
         K A
Subjt:  TKRA

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]5.9e-1638.52Show/hide
Query:  WIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPW
        W  P  +  K+NVDAAW  SP S+G  AIIR + G++      S+   Y  P+AE   + +G+ L   +  K+IIV+SDCS AI+L  K       V  W
Subjt:  WIPPSGNMWKVNVDAAWTSSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPW

Query:  LEAIWDQLTFFSNVIFVYTSRKKNGVADGITKRAK
        LE IW+    F  + F Y  R  N +AD + KR +
Subjt:  LEAIWDQLTFFSNVIFVYTSRKKNGVADGITKRAK

TrEMBL top hitse value%identityAlignment
A0A1R3H2R0 Reverse transcriptase1.4e-1528.64Show/hide
Query:  NDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGA
        N  A L  L+ + +T W +W +RN+  H Q+    +  ++ I  + R       +       RR +      W PP+  + KVNVDAA+ +     GL A
Subjt:  NDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGA

Query:  IIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVAD
        + R S G ++ +     +    +  AE+ T+  GV +A+  G    ++ESDC   +  + KK  V  E +  LE I D  +FF ++ FV+  R+ N  A 
Subjt:  IIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVAD

Query:  GITKRA
         + K A
Subjt:  GITKRA

A0A6J1CP26 uncharacterized protein LOC1110134121.9e-1529.86Show/hide
Query:  DFASLSELELIAVTSWSIWSDRNKK----VHGQS-ILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHC-WIPPSGNMWKVNVDAAWTSSPPS
        D A   E     + +W IW  RNK     VH ++  + +      IN+  R          ++L L R +E      W PP+ N WK+N +AAW +   +
Subjt:  DFASLSELELIAVTSWSIWSDRNKK----VHGQS-ILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHC-WIPPSGNMWKVNVDAAWTSSPPS

Query:  TGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKK
         G+G I+R   G ++ AS   ++ +      EVM I EG+   +   C+ I +ESD  +AI+L+ ++ +   E+   LE IW  +     V   + SR+ 
Subjt:  TGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKK

Query:  NGVADGITKRA
        N VA G+ +RA
Subjt:  NGVADGITKRA

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1830.37Show/hide
Query:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWT
        ++ W  + +     +L L A+T W IW+DRN  +HG+ + P+  K  W+      FLD++S+ +  N   R   N    +  W P S    K+N DAA  
Subjt:  MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSR-RAENLPLR--RNLESELHCWIPPSGNMWKVNVDAAWT

Query:  SSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVY
         +  ST  G IIR S  ++V A++  V       +AE+  I EG+  A       + VESD   AI L+  +    G+ + W+  I      F+ + F +
Subjt:  SSPPSTGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVY

Query:  TSRKKNGVADGITK
        +SR+ N  A G+ K
Subjt:  TSRKKNGVADGITK

A0A6J1DZK3 uncharacterized protein LOC1110249687.6e-1731.5Show/hide
Query:  SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIR
        S SEL L  +T W++W+DR+  ++ + I     K  WI  Y + + +  ++     +P        ++ W PP G + K+N DAA   S   +G+G ++R
Subjt:  SLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNY-QRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIR

Query:  VSMGNIVGASTFSVKIDY---KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVA
             IVGA      +D+   K P +A+++ I EG+SLA  LG   ++VE+D  +A+NL+  K+   GE   W+E I      F  + F +  R+ N VA
Subjt:  VSMGNIVGASTFSVKIDY---KAP-IAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVA

A0A803PIB6 Uncharacterized protein8.4e-1630.19Show/hide
Query:  DRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPP
        D  L ++   + SELE +  T W IWSDRN  +H + +      +S    Y   F    S  A  +      ++    W+PP+ +  K+NVDAA  SS  
Subjt:  DRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPP

Query:  STGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRK
          G+G IIR S G ++ A +  V  ++K+   E   +F G+  AK L  +   VE+DC   ++ +  K          +E I   L+ FSN    +  R 
Subjt:  STGLGAIIRVSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRK

Query:  KNGVADGITKRA
         N  A G+ K+A
Subjt:  KNGVADGITKRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGATGGCTGAAAATAAATGATTTTGCGTCGTTATCGGAGCTGGAATTGATTGCAGTCACAAGCTGGTCAATTTGGAGCGACAGAAACAAGAAGGTTCATGGTCA
GAGTATTCTGCCAATTAATACGAAAAACAGCTGGATAAATAATTATCAAAGGATTTTTTTGGATGCAAACTCAAGAAGAGCTGAAAATTTACCTTTGAGAAGAAATCTCG
AGTCGGAATTGCATTGTTGGATTCCCCCTTCTGGAAACATGTGGAAGGTTAACGTTGATGCAGCTTGGACTTCGTCTCCTCCGTCAACGGGGTTGGGGGCAATTATCAGA
GTTTCCATGGGCAACATAGTTGGAGCTTCGACTTTCTCAGTAAAAATCGACTACAAAGCCCCCATAGCAGAAGTGATGACAATCTTCGAAGGAGTATCGCTTGCTAAGTT
TTTAGGATGTAAGGAGATTATCGTGGAATCTGATTGCTCTCAGGCAATTAATTTGGTTGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAACCTTGGTTGGAGGCCATCT
GGGATCAACTTACTTTTTTCTCAAATGTCATTTTTGTATATACTTCCAGAAAGAAAAATGGGGTGGCTGATGGTATAACTAAGAGGGCTAAGAATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGATGGCTGAAAATAAATGATTTTGCGTCGTTATCGGAGCTGGAATTGATTGCAGTCACAAGCTGGTCAATTTGGAGCGACAGAAACAAGAAGGTTCATGGTCA
GAGTATTCTGCCAATTAATACGAAAAACAGCTGGATAAATAATTATCAAAGGATTTTTTTGGATGCAAACTCAAGAAGAGCTGAAAATTTACCTTTGAGAAGAAATCTCG
AGTCGGAATTGCATTGTTGGATTCCCCCTTCTGGAAACATGTGGAAGGTTAACGTTGATGCAGCTTGGACTTCGTCTCCTCCGTCAACGGGGTTGGGGGCAATTATCAGA
GTTTCCATGGGCAACATAGTTGGAGCTTCGACTTTCTCAGTAAAAATCGACTACAAAGCCCCCATAGCAGAAGTGATGACAATCTTCGAAGGAGTATCGCTTGCTAAGTT
TTTAGGATGTAAGGAGATTATCGTGGAATCTGATTGCTCTCAGGCAATTAATTTGGTTGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAACCTTGGTTGGAGGCCATCT
GGGATCAACTTACTTTTTTCTCAAATGTCATTTTTGTATATACTTCCAGAAAGAAAAATGGGGTGGCTGATGGTATAACTAAGAGGGCTAAGAATGCTTAA
Protein sequenceShow/hide protein sequence
MDRWLKINDFASLSELELIAVTSWSIWSDRNKKVHGQSILPINTKNSWINNYQRIFLDANSRRAENLPLRRNLESELHCWIPPSGNMWKVNVDAAWTSSPPSTGLGAIIR
VSMGNIVGASTFSVKIDYKAPIAEVMTIFEGVSLAKFLGCKEIIVESDCSQAINLVAKKTEVWGEVEPWLEAIWDQLTFFSNVIFVYTSRKKNGVADGITKRAKNA