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Lag0026169 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026169
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionEukaryotic translation initiation factor 3 subunit I
Genome locationchr10:31242107..31246002
RNA-Seq ExpressionLag0026169
SyntenyLag0026169
Gene Ontology termsGO:0002183 - cytoplasmic translational initiation (biological process)
GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A2N9H302 Eukaryotic translation initiation factor 3 subunit I5.7e-0462.75Show/hide
Query:  MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK
        ML C   D+   FD    LG +VVLGGGQDASAV TT+HR GKFEAKF+ K
Subjt:  MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK
SwissProt top hitse value%identityAlignment
Q38884 Eukaryotic translation initiation factor 3 subunit I5.0e-0586.21Show/hide
Query:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
        VVLGGGQDASAV TT+HR GKFEAKFY K
Subjt:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
Q6CI08 Eukaryotic translation initiation factor 3 subunit I1.1e-0449.25Show/hide
Query:  SSKDEGG--VGVDSL-MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK
        SSKD+      VDSL +L     D  M+     S    V+LGGGQDA  V TT+ R GKFEA+FYHK
Subjt:  SSKDEGG--VGVDSL-MLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAV-TTNHRVGKFEAKFYHK
Arabidopsis top hitse value%identityAlignment
AT2G46280.1 TGF-beta receptor interacting protein 13.6e-0686.21Show/hide
Query:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
        VVLGGGQDASAV TT+HR GKFEAKFY K
Subjt:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
AT2G46280.2 TGF-beta receptor interacting protein 13.6e-0686.21Show/hide
Query:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
        VVLGGGQDASAV TT+HR GKFEAKFY K
Subjt:  VVLGGGQDASAV-TTNHRVGKFEAKFYHK
AT2G46290.1 Transducin/WD40 repeat-like superfamily protein1.0e-0588.89Show/hide
Query:  VVLGGGQDASAV-TTNHRVGKFEAKFY
        VVLGGGQDASAV TT+HR GKFEAKFY
Subjt:  VVLGGGQDASAV-TTNHRVGKFEAKFY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCC
AATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTG
TAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCT
TTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAAC
TAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTT
TTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTA
CTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATCGGGAAGTCGTCGTCGTCGCTCCAGTTTACATTGTGTTAAACCCCACTTCAGTTCCTCTTATCGCCACTTCCATGGCTCTGTCCTCGTAATCGACGCTACCCC
AATAAGGTTGCCTCTTAATCCTTTACTCTGCCCCCAAAATTTCGAGAAACTTGATATTAATTTACAAAATGATTTGGAGTTAAGTTTGAGATTGGTGGTTGAAGGTGGTG
TAAGACAACCTTACTTGAACATAATCTTACTTGAATATGATCTGTTATATAAAGGTTGTACAACTATGCCCTTAAGTTCTAAGGATGAAGGTGGTGTGGGGGTAGACTCT
TTAATGCTAGATTGTTTAGTTAATGATGTTAAAATGTCTTTCGACTCATATCGGTCTCTTGGGTTTCAAGTAGTACTTGGTGGTGGACAAGATGCTTCAGCAGTAACAAC
TAATCATCGGGTCGGAAAGTTTGAAGCTAAATTCTATCACAAGAACCACCGTCGGCTCGTCTGCTTCGCCGCCGCCAAAGTTCTTCCATTTTCTTCCTTCTTTTCTTCTT
TTATCATATCTGCCACCTCTTTCATTGGACCAGTGGTAATCGAGAATGTGGTTGCTACTTTTGATGGGGAGCGCCACATTCTTATAAGGTGCACCATTTATTGTGCTTTA
CTTTGA
Protein sequenceShow/hide protein sequence
MLSGSRRRRSSLHCVKPHFSSSYRHFHGSVLVIDATPIRLPLNPLLCPQNFEKLDINLQNDLELSLRLVVEGGVRQPYLNIILLEYDLLYKGCTTMPLSSKDEGGVGVDS
LMLDCLVNDVKMSFDSYRSLGFQVVLGGGQDASAVTTNHRVGKFEAKFYHKNHRRLVCFAAAKVLPFSSFFSSFIISATSFIGPVVIENVVATFDGERHILIRCTIYCAL
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