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Lag0026176 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026176
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:31500112..31504025
RNA-Seq ExpressionLag0026176
SyntenyLag0026176
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0954.29Show/hide
Query:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P+ ++ +SSSE++ +ET  P++MSV+  D+ T++ RMT+LE+ +NM MK VE+RDYEIASLKN+IES
Subjt:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0855.71Show/hide
Query:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P  ++  S SE  ++E + P++MSVM+ D+ T+E RM +LE+ VNM MKVVE+RDYEIASLKN+IES
Subjt:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

KAA0043179.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0854.29Show/hide
Query:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +EIP  ++ +SS E   +E   P++MSVM+ D+ T+E+RM KLE+ VNM +K VE+RD+EIASLKN+IES
Subjt:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0858.73Show/hide
Query:  EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        E  SS      ET  P++MSVM+ ++ T+E+RMTKLE+ +NM +KVVE+RDYEIASLKN+IES
Subjt:  EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0852.86Show/hide
Query:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P  ++ +S SE++ +E   P++MSVM+ D+ T+E+RM +LE+ VNM MK VE+RD+EIASLKN+IES
Subjt:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

TrEMBL top hitse value%identityAlignment
A0A5A7T6D4 Ty3-gypsy retrotransposon protein1.3e-0954.29Show/hide
Query:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P+ ++ +SSSE++ +ET  P++MSV+  D+ T++ RMT+LE+ +NM MK VE+RDYEIASLKN+IES
Subjt:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

A0A5A7U601 Ty3-gypsy retrotransposon protein8.2e-0958.73Show/hide
Query:  EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        E  SS      ET  P++MSVM+ ++ T+E+RMTKLE+ +NM +KVVE+RDYEIASLKN+IES
Subjt:  EDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.4e-0852.86Show/hide
Query:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P  ++ +S SE++ +E   P++MSVM+ D+ T+E+RM +LE+ VNM MK VE+RD+EIASLKN+IES
Subjt:  QEIPLFEDSSSSSEKA-KETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.1e-0855.71Show/hide
Query:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +E P  ++  S SE  ++E + P++MSVM+ D+ T+E RM +LE+ VNM MKVVE+RDYEIASLKN+IES
Subjt:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

A0A5D3CPF1 Ty3-gypsy retrotransposon protein1.4e-0854.29Show/hide
Query:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES
        +EIP  ++ +SS E   +E   P++MSVM+ D+ T+E+RM KLE+ VNM +K VE+RD+EIASLKN+IES
Subjt:  QEIPLFEDSSSSSE-KAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIASLKNYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCTGGACTGCCAAGTCTACCTCACCCCATCTGGTTCGAGCCCATACACTTCATTTGAGACAGACTCACCTGGCCTAAGCCGAGGCCGACCCCAAACCTTAAAGGT
AATTTTGGACCACTCCGATGTACAAGGAGCTGACGAGGAAAACCAGGCAGAAATAGAGCTGGAAGATGGACCCCAGAGGCGAAACGAGCCAATAGGTCGGGCAAAGACCG
AAGGGGTCAGACTTTCGACCCGACCCCTACTCGGCCTCGGCCATGGTCAAGGCCGAGCTCGATCGCCTTCGTTTGGGACCCGAACTCTATTCTCTGACCCTCCTCTTGCT
CTTACTTTCCTGCTTCCCATCGTCCTTCTTGCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGTTTACTGTCTTGTAGGCCACACCTTCCCTC
CTCACAAACAAATTTATCGTTGGTGGCACGTGAAGGCCAGGAAATTCCTTTATTTGAGGATTCTTCTTCATCTTCTGAAAAGGCAAAAGAGACATCAGATCCTGACATGA
TGTCTGTAATGATGGCGGACATAGGTACAAACGAAGAAAGAATGACTAAACTGGAAAGGATGGTCAACATGCGGATGAAGGTGGTTGAAAAGAGAGATTATGAAATTGCA
TCTCTAAAGAATTACATAGAAAGTCTGTTGGGTTTTATGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCTGGACTGCCAAGTCTACCTCACCCCATCTGGTTCGAGCCCATACACTTCATTTGAGACAGACTCACCTGGCCTAAGCCGAGGCCGACCCCAAACCTTAAAGGT
AATTTTGGACCACTCCGATGTACAAGGAGCTGACGAGGAAAACCAGGCAGAAATAGAGCTGGAAGATGGACCCCAGAGGCGAAACGAGCCAATAGGTCGGGCAAAGACCG
AAGGGGTCAGACTTTCGACCCGACCCCTACTCGGCCTCGGCCATGGTCAAGGCCGAGCTCGATCGCCTTCGTTTGGGACCCGAACTCTATTCTCTGACCCTCCTCTTGCT
CTTACTTTCCTGCTTCCCATCGTCCTTCTTGCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGTTTACTGTCTTGTAGGCCACACCTTCCCTC
CTCACAAACAAATTTATCGTTGGTGGCACGTGAAGGCCAGGAAATTCCTTTATTTGAGGATTCTTCTTCATCTTCTGAAAAGGCAAAAGAGACATCAGATCCTGACATGA
TGTCTGTAATGATGGCGGACATAGGTACAAACGAAGAAAGAATGACTAAACTGGAAAGGATGGTCAACATGCGGATGAAGGTGGTTGAAAAGAGAGATTATGAAATTGCA
TCTCTAAAGAATTACATAGAAAGTCTGTTGGGTTTTATGTTCTAA
Protein sequenceShow/hide protein sequence
MSLDCQVYLTPSGSSPYTSFETDSPGLSRGRPQTLKVILDHSDVQGADEENQAEIELEDGPQRRNEPIGRAKTEGVRLSTRPLLGLGHGQGRARSPSFGTRTLFSDPPLA
LTFLLPIVLLADLSIGGGVASTTPVCSLLSCRPHLPSSQTNLSLVAREGQEIPLFEDSSSSSEKAKETSDPDMMSVMMADIGTNEERMTKLERMVNMRMKVVEKRDYEIA
SLKNYIESLLGFMF