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Lag0026178 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026178
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:31645090..31645551
RNA-Seq ExpressionLag0026178
SyntenyLag0026178
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027090317.1 uncharacterized protein LOC113711350 [Coffea arabica]2.7e-3155.28Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +++SFNLNG K G+I PSRG+RQGDPLSPYLF+LC EG S+L++ A+ RK   G+ ++K SP +SHLFF DDSLL   A + EV  IK +++ Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NFEKSA+  S NTP  ++ E+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
XP_027120381.1 uncharacterized protein LOC113737334 [Coffea arabica]6.7e-3052.03Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        + +SFNLNG K G + PSRG+RQGDPLSPYLF++C EGLS+L+  A+  K   G+ I + SP +SHLFF DDSLL   A + E   +K +L +Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NF+KSA+ +S N+P  ++GE+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
XP_027154988.1 uncharacterized protein LOC113755115 [Coffea eugenioides]1.3e-3055.28Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+  +   G+ I + SP ISHLFF DDSLL   A + E   +K IL+ Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NF+KSA+  S NT   ++ E+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
XP_027157225.1 uncharacterized protein LOC113758655 [Coffea eugenioides]1.3e-3055.28Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+  +   G+ I + SP ISHLFF DDSLL   A + E   +K IL+ Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NF+KSA+  S NT   ++ E+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
XP_027171561.1 uncharacterized protein LOC113771144 [Coffea eugenioides]3.5e-3156.91Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +T+SFNLNG K G++ P+RG+RQGDPLSPYLF++CAEGLSSL+H A+  K   G+ I + SP ISHLFF DDSLL   A R E   +K IL  Y +ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++N+EKSAL  S NT   ++ E+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
TrEMBL top hitse value%identityAlignment
A0A6P6S611 uncharacterized protein LOC1136874833.2e-3060Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +T+SFNLNG K G + PSRGLRQGDPLSPYLF++CAEGLS L+  AM  K   G+ I K SP +SHLFF DDSLL   A + E   +K IL+ Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNT
        ++NFEKSA+  S NT
Subjt:  LINFEKSALSVSPNT
A0A6P6UKR4 uncharacterized protein LOC1137113501.3e-3155.28Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        +++SFNLNG K G+I PSRG+RQGDPLSPYLF+LC EG S+L++ A+ RK   G+ ++K SP +SHLFF DDSLL   A + EV  IK +++ Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NFEKSA+  S NTP  ++ E+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
A0A6P6X0C0 uncharacterized protein LOC1137373343.2e-3052.03Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        + +SFNLNG K G + PSRG+RQGDPLSPYLF++C EGLS+L+  A+  K   G+ I + SP +SHLFF DDSLL   A + E   +K +L +Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
        ++NF+KSA+ +S N+P  ++GE+
Subjt:  LINFEKSALSVSPNTPTAVQGEL
A0A803PVI9 Uncharacterized protein1.9e-3056.1Show/hide
Query:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ
        ++FSF +NG  QG ++P+RG+RQGDPLSPYLF+LCAEGLS LL     R    GL +A+ +P +SHLFF DDSLLL  A      AI+  LD+Y  ASGQ
Subjt:  MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQ

Query:  LINFEKSALSVSPNTPTAVQGEL
         +N +KS LS SPNT T+VQ +L
Subjt:  LINFEKSALSVSPNTPTAVQGEL
A0A803PZ04 Uncharacterized protein1.9e-3056.3Show/hide
Query:  TFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQL
        T SFN+NG  +G ++P RGLRQGDPLSPYLFL+C+EGLSSLL    S     GL+IA+L+P +SHL F DDSLL + A      AI+ +LD+Y  ASGQL
Subjt:  TFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQL

Query:  INFEKSALSVSPNTPTAVQ
        +N EK+ +S SPNT  A +
Subjt:  INFEKSALSVSPNTPTAVQ
SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012502.8e-1555.07Show/hide
Query:  FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDS
        F +NG  QG + PSRGLRQGDPLSPYLF+LC E LS L   A  +   PG+ ++  SP I+HL F DD+
Subjt:  FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDS
Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)2.0e-1655.07Show/hide
Query:  FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDS
        F +NG  QG + PSRGLRQGDPLSPYLF+LC E LS L   A  +   PG+ ++  SP I+HL F DD+
Subjt:  FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGA
AGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCT
TGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCT
GTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCT
CGATCAAAAACTTCGACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGA
AGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCT
TGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCT
GTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCT
CGATCAAAAACTTCGACCTTGA
Protein sequenceShow/hide protein sequence
MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALS
VSPNTPTAVQGELGIFLVFLLLCNATRSIWVSQHLCLDQKLRP