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Lag0026179 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026179
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:31645692..31646956
RNA-Seq ExpressionLag0026179
SyntenyLag0026179
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4308253.1 unnamed protein product [Prunus armeniaca]1.1e-0847.62Show/hide
Query:  HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        H  + L L  R W  DL+ R+F  +EA+LI+++PL R   PD+L+WHF K  V+TV+SGY +A
Subjt:  HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
OMO73078.1 reverse transcriptase [Corchorus capsularis]2.5e-0846.84Show/hide
Query:  FEVTSVRPTV-ALHTVRKLL-LSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHG
        F VTS  P    LH VR L+  + R W  D++ ++F  DEAK I  IP+G   + D+LVWHF     +TVKSGYR  HG
Subjt:  FEVTSVRPTV-ALHTVRKLL-LSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHG
XP_024157591.1 uncharacterized protein LOC112165325 [Rosa chinensis]9.4e-0842.68Show/hide
Query:  CRLCFEVTSVRPTVAL---HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        C + F+V S  P   L   H V  L      WN  L+Q  F   EA++I  +PLG   +PD+LVWHF K+  + VKSGY VA
Subjt:  CRLCFEVTSVRPTVAL---HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
XP_024164210.1 uncharacterized protein LOC112171231 [Rosa chinensis]2.5e-0842.68Show/hide
Query:  CRLCFEVTSVRPTVAL---HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        C + F+V S  P   L   H V  L      WN  L+Q +F   EA++I  +PLG   +PD+LVWHF K+  ++VKSGY VA
Subjt:  CRLCFEVTSVRPTVAL---HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
XP_024172251.1 uncharacterized protein LOC112178325 [Rosa chinensis]2.9e-0940.85Show/hide
Query:  WNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHGGRTMCIFSGIAKGQKPSN
        WN +L+   F  DEA LI +IPL R  +PD+L+WHF+ + +FT KS Y++A     + + SG +    PS+
Subjt:  WNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHGGRTMCIFSGIAKGQKPSN
TrEMBL top hitse value%identityAlignment
A0A1R3HRY4 Reverse transcriptase1.2e-0846.84Show/hide
Query:  FEVTSVRPTV-ALHTVRKLL-LSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHG
        F VTS  P    LH VR L+  + R W  D++ ++F  DEAK I  IP+G   + D+LVWHF     +TVKSGYR  HG
Subjt:  FEVTSVRPTV-ALHTVRKLL-LSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVAHG
A0A6J5V484 zf-RVT domain-containing protein6.0e-0843.42Show/hide
Query:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        F+ +S  P + L TV  L+ S  + W  DL+ R+F  +EA+LI+++P+ R   PD+L+WHF K  V+TV+SGY +A
Subjt:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
A0A6J5V8Q1 Reverse transcriptase domain-containing protein6.0e-0843.42Show/hide
Query:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        F+ +S  P + L TV  L+ S  + W  DL+ R+F  +EA+LI+++P+ R   PD+L+WHF K  V+TV+SGY +A
Subjt:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
A0A6J5X6M8 Uncharacterized protein5.4e-0947.62Show/hide
Query:  HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        H  + L L  R W  DL+ R+F  +EA+LI+++PL R   PD+L+WHF K  V+TV+SGY +A
Subjt:  HTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
A0A6J5XST4 Uncharacterized protein6.0e-0843.42Show/hide
Query:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        F+ +S  P + L TV  L+ S  + W  DL+ R+F  +EA+LI+++P+ R   PD+L+WHF K  V+TV+SGY +A
Subjt:  FEVTSVRPTVALHTVRKLLLSP-RFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)8.8e-0433.77Show/hide
Query:  RPTVALHTVRKLLL--------SPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
        RP  ++  +R  LL        +   W  D LQ +    +  LI  I   R +L D   W   KS  +TVKSGY VA
Subjt:  RPTVALHTVRKLLL--------SPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRVA
AT4G29090.1 Ribonuclease H-like superfamily protein6.7e-0437.04Show/hide
Query:  SPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRV
        S R W  D+++ +F   E KLI  +  G   + D   W +  S  +TVKSGY V
Subjt:  SPRFWNTDLLQRVFTYDEAKLISAIPLGRGFLPDQLVWHFEKSRVFTVKSGYRV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGTTTCTGGTGGAATAGTGGGGATAGGAAAGGAAGATTCATTGGATTAGCTAGTAGCATATGTGTTAGCAAAAATGTAGGGGTGGTATGGGTTTTTGGGACCTT
GAGCTCTTCAATAAATCCCTTTTGGCAAAGCAATGTTGGAGAATTGTTAATGAACTGTCCTCCCTTTTGTCGACTGTGCTTCGAGGTGACCAGTGTTCGGCCTACAGTTG
CATTGCATACGGTCCGTAAACTACTATTATCTCCTAGGTTTTGGAATACTGATCTCCTGCAACGTGTTTTTACTTATGATGAGGCCAAGTTAATTTCAGCCATTCCTTTG
GGACGTGGATTTCTTCCAGATCAACTAGTTTGGCACTTTGAAAAATCTAGAGTATTCACAGTCAAAAGTGGTTATCGTGTGGCTCATGGGGGGAGGACAATGTGCATATT
TTCTGGAATTGCAAAGGGGCAAAAGCCCTCTAATCTCGATCCAAATTTAGCGCATTTTGACACCCTAATGGGGATAAGACAACTCTTGAACTGCTACGGTATCTGTGGGG
GGGAACAAATGATCTACTATGTTGGGCGGAGAACTATGTCGATGTTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGAATCGTATTTTAATTTC
GTTTTGCAAAATACTCATACATTGGCAAAATTCATTAAATCTAGGCTAAGCATTGAGAAGCATACCTCCGTTGGCGACTCTGAAATCAACAACGAACACCACCATAAGGG
CTTCCCCGCTATCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGTTTCTGGTGGAATAGTGGGGATAGGAAAGGAAGATTCATTGGATTAGCTAGTAGCATATGTGTTAGCAAAAATGTAGGGGTGGTATGGGTTTTTGGGACCTT
GAGCTCTTCAATAAATCCCTTTTGGCAAAGCAATGTTGGAGAATTGTTAATGAACTGTCCTCCCTTTTGTCGACTGTGCTTCGAGGTGACCAGTGTTCGGCCTACAGTTG
CATTGCATACGGTCCGTAAACTACTATTATCTCCTAGGTTTTGGAATACTGATCTCCTGCAACGTGTTTTTACTTATGATGAGGCCAAGTTAATTTCAGCCATTCCTTTG
GGACGTGGATTTCTTCCAGATCAACTAGTTTGGCACTTTGAAAAATCTAGAGTATTCACAGTCAAAAGTGGTTATCGTGTGGCTCATGGGGGGAGGACAATGTGCATATT
TTCTGGAATTGCAAAGGGGCAAAAGCCCTCTAATCTCGATCCAAATTTAGCGCATTTTGACACCCTAATGGGGATAAGACAACTCTTGAACTGCTACGGTATCTGTGGGG
GGGAACAAATGATCTACTATGTTGGGCGGAGAACTATGTCGATGTTGAAGGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGAATCGTATTTTAATTTC
GTTTTGCAAAATACTCATACATTGGCAAAATTCATTAAATCTAGGCTAAGCATTGAGAAGCATACCTCCGTTGGCGACTCTGAAATCAACAACGAACACCACCATAAGGG
CTTCCCCGCTATCCTCTAA
Protein sequenceShow/hide protein sequence
MARFWWNSGDRKGRFIGLASSICVSKNVGVVWVFGTLSSSINPFWQSNVGELLMNCPPFCRLCFEVTSVRPTVALHTVRKLLLSPRFWNTDLLQRVFTYDEAKLISAIPL
GRGFLPDQLVWHFEKSRVFTVKSGYRVAHGGRTMCIFSGIAKGQKPSNLDPNLAHFDTLMGIRQLLNCYGICGGEQMIYYVGRRTMSMLKDWNSQFRYSGSNWTESYFNF
VLQNTHTLAKFIKSRLSIEKHTSVGDSEINNEHHHKGFPAIL