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Lag0026180 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026180
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:31649138..31649470
RNA-Seq ExpressionLag0026180
SyntenyLag0026180
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5945963.1 hypothetical protein HYC85_016191 [Camellia sinensis]2.2e-0633.65Show/hide
Query:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA
        +++R+H G V+ A    L   +D D AE  A    V+   DL F ++ ++ DSLR+ + L+ E E++SE G++L       +  ++   S   R+GN  A
Subjt:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA

Query:  HGLA
        HGLA
Subjt:  HGLA

XP_010680493.1 PREDICTED: uncharacterized protein LOC104895631 [Beta vulgaris subsp. vulgaris]1.7e-0632.71Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        +VRD EG V+LA    +    +V++AE  +   G+Q  ++    NL+V+VD  ++Y  L   +  +S  G +++D+  Y    + I FS  +R+GN+ AH
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLACLKK
         LA + K
Subjt:  GLACLKK

XP_010684025.1 PREDICTED: uncharacterized protein LOC104898628 [Beta vulgaris subsp. vulgaris]1.3e-0634.58Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        +VRD +G V++A  + +    DV +AE  +   GVQ  L+ SF NL+++VD+LR+Y+ L          G+++ D+  +    + + FS  +R GN  AH
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLACLKK
        GLA   K
Subjt:  GLACLKK

XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]2.2e-0632.11Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        +VRD  G VL A    ++   +VD+AE      G+Q  ++  F +L+++VD+L+++  L R     S  G ++ D+ +     + + FS T+R+GN+ AH
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLACLKKCS
         LA  K C+
Subjt:  GLACLKKCS

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.0e-0834.62Show/hide
Query:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA
        +I+RDH G VL +    L+    VD AE  A V G++  ++     +L++ DSLR+Y L  R+ E +S+ G+++  +  +     ++ +SFT+R GN  A
Subjt:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA

Query:  HGLA
        H LA
Subjt:  HGLA

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105335.0e-0934.62Show/hide
Query:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA
        +I+RDH G VL +    L+    VD AE  A V G++  ++     +L++ DSLR+Y L  R+ E +S+ G+++  +  +     ++ +SFT+R GN  A
Subjt:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA

Query:  HGLA
        H LA
Subjt:  HGLA

A0A7J6HCI0 Uncharacterized protein5.8e-0531.07Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        ++RD +G +++A  S +  CL + LAE  AV LG+Q  +  S  N  V  DS  + + L  +  Y ++ G+L+ D+         + F F  R  N+ A+
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLA
         LA
Subjt:  GLA

A0A7J6HML3 Uncharacterized protein5.8e-0532.04Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        ++RD +G +++A  S +  CL V LAE  AV LG+Q  +  S  N  V  DS  + + L  +  Y ++ G L+ D+         + F F  R  N+ A+
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLA
         LA
Subjt:  GLA

A0A7J7GYW5 Uncharacterized protein1.1e-0633.65Show/hide
Query:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA
        +++R+H G V+ A    L   +D D AE  A    V+   DL F ++ ++ DSLR+ + L+ E E++SE G++L       +  ++   S   R+GN  A
Subjt:  MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAA

Query:  HGLA
        HGLA
Subjt:  HGLA

A0A803QSC8 Uncharacterized protein5.8e-0532.04Show/hide
Query:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH
        ++RD +G +++A  S +  CL V LAE  AV LG+Q  +  S  N  V  DS  + + L  +  Y ++ G L+ D+         + F F  R  N+ A+
Subjt:  IVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAH

Query:  GLA
         LA
Subjt:  GLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGTTCGAGATCATGAAGGTGCAGTACTATTGGCTGGAATCTCCGCTCTTCAAAGCTGCCTTGATGTTGATTTGGCTGAGGGTCGGGCAGTGGTACTGGGAGTACA
AACGACTTTGGATCTGAGTTTTTGCAATTTGCTTGTCAAAGTGGACTCTCTACGGGTCTATCGTCTTCTTCAGAGAGAGGTAGAGTATATTTCTGAGCAAGGTAATTTGC
TGTCCGATCTCCCTAAATATGATCGTATGGGAGCAAAGATTATCTTCAGTTTTACTCAACGGGAAGGCAACCAGGCTGCTCATGGTCTTGCTTGCTTAAAAAAATGTAGC
TGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGTTCGAGATCATGAAGGTGCAGTACTATTGGCTGGAATCTCCGCTCTTCAAAGCTGCCTTGATGTTGATTTGGCTGAGGGTCGGGCAGTGGTACTGGGAGTACA
AACGACTTTGGATCTGAGTTTTTGCAATTTGCTTGTCAAAGTGGACTCTCTACGGGTCTATCGTCTTCTTCAGAGAGAGGTAGAGTATATTTCTGAGCAAGGTAATTTGC
TGTCCGATCTCCCTAAATATGATCGTATGGGAGCAAAGATTATCTTCAGTTTTACTCAACGGGAAGGCAACCAGGCTGCTCATGGTCTTGCTTGCTTAAAAAAATGTAGC
TGA
Protein sequenceShow/hide protein sequence
MIVRDHEGAVLLAGISALQSCLDVDLAEGRAVVLGVQTTLDLSFCNLLVKVDSLRVYRLLQREVEYISEQGNLLSDLPKYDRMGAKIIFSFTQREGNQAAHGLACLKKCS