CuGenDBv2

Gene ID	Lag0026214
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr10:32497219..32498769
RNA-Seq Expression	Lag0026214
Synteny	Lag0026214
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR026960 - Reverse transcriptase zinc-binding domain IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]

2.3e-59

31.05

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGFR++E FNQ +LAKQ WR+L+   SL+  + + RY P + FLEAE+G+ PSF+WR+L WG+ELL +G RWR+G+G S  +Y   WLP     ++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV
         P LP  +   D F+ SG WN                                                 G++       P    D    +W  +W L +
Subjt:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV

Query:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV
        P+K++FF+WR   D LP    L  R +  + +C  C   AE  LH  W C   K +W  S + +    +    F ++  A++    G +  L     W +
Subjt:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV

Query:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG
        WN RN   + G S+           L    SD  +  H   GR+      L   RP     + D+  G G V+R   GE FMAAC+ R+   +     E 
Subjt:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG

Query:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT
         A + G++ A  MGF   ++E D+   L  I   E ++      + EV  L+++FR ++  W       +PR GNKVAH LA  AF  ++ V WI++ P+
Subjt:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT

Query:  KISDALRCDVVS
         +   L  DV+S
Subjt:  KISDALRCDVVS

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]

1.4e-59

30.1

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGFR++E FNQ +LAKQ WR+L+   SL+  + + RY P + FLEAE+G+ PSF+WR+L WG+ELL +G RWR+GNG S  +Y   WLP     ++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFSVSGGWNEGV-------------------------------------------------QDRPS--PS-NPDRMRAWWAGLWRLNV
         P LP  +   D F+ SG WN  +                                                 +D+ S  PS   D    +W  +W L +
Subjt:  APSLPFDSTESDFFSVSGGWNEGV-------------------------------------------------QDRPS--PS-NPDRMRAWWAGLWRLNV

Query:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV
        P+K++FF+WR   D LP    L  R +  + +C  C   AE  LH  W C   K +W  S + +    +    F ++  A++    G +  L     W +
Subjt:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV

Query:  WNLRNIMSWGGHSD----------------------GRDLWTYSSDYLSAFH------AGGRRGLVGESLRPDTWDAGGGCVLRGVEGEVFMAACL-RLQ
        WN RN   + G S+                         +    S   +  H      AG  +  V  +++      G G V+R   GE FMAAC+ R+Q
Subjt:  WNLRNIMSWGGHSD----------------------GRDLWTYSSDYLSAFH------AGGRRGLVGESLRPDTWDAGGGCVLRGVEGEVFMAACL-RLQ

Query:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDK
          +     E  A + G++ A  MGF   V+E D+   +  +          GLL+++   +LH +      ++PR GNKVAH LA  AF  ++ V WI++
Subjt:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDK

Query:  WPTKISDALRCDVVS
         P  +   L  DV+S
Subjt:  WPTKISDALRCDVVS

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

1.6e-73

31.53

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GG+GFR++ELFN+ +LAKQ WR+L   +S+L  VLKGRYF    F+EA++   PS++WR++LWGR+LL +G RWRIGNG S  IYG NW+PN+ +L++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFS-VSGGWNEGV-----------------------QDR-----------------------------PSPSNPDRMRAWWAGLWRLN
        +P LP  S  S       GGW   V                       +DR                             PS S+ + +R WW G W+++
Subjt:  APSLPFDSTESDFFS-VSGGWNEGV-----------------------QDR-----------------------------PSPSNPDRMRAWWAGLWRLN

Query:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWS
        +P+K++ F+WRL  DRLPT  NL KRG+ +++ C  C  + ED +HLFW C   +++W+ SKF     PF       I+    + L  ADFE + V  W 
Subjt:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWS

Query:  VWNLRNIMSWGGHSD-----GRDLWTYSSDYLSAFHAGGRRGLVGE-----------------------SLRPDTWDAGGGCVLRGVEGEVFMAACLRLQ
        +WN RN  ++   +      G +L  +++ Y   F       + G                        S       AG G ++    G+V  AA   L+
Subjt:  VWNLRNIMSWGGHSD-----GRDLWTYSSDYLSAFHAGGRRGLVGE-----------------------SLRPDTWDAGGGCVLRGVEGEVFMAACLRLQ

Query:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDK
           SVD+AE  A + G+QLA ++G                +H  L D+SE G ++   +      ++    +  R+GNK AH+LA  A   H   +W++ 
Subjt:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDK

Query:  WPTKISDALRCDVVSSM
        WP ++   L  + +  +
Subjt:  WPTKISDALRCDVVSSM

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]

2.6e-55

28.54

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GG+GFR++  FNQ ++AKQ WR++Q  SSL+  VLK RYF   GF+ A LGS+PSFVWR+++WGR++L +G RWRIGNG++  +YG+NW+P   + +  S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESD-----------------------------------------------FFSVSGGWNEGVQ----DRPSPSNPDRMRAWWAGLWRLNVP
        APS+  D+T ++                                               ++SV  G+   ++    + PS SN D  +  W  +W+L +P
Subjt:  APSLPFDSTESD-----------------------------------------------FFSVSGGWNEGVQ----DRPSPSNPDRMRAWWAGLWRLNVP

Query:  SKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSVW
         K++ F+WR  HD LPT  NL K+ +    +C  C    E   H    C   + +W  S  A   R   +     +++    +    +   V    W++W
Subjt:  SKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSVW

Query:  NLRNIMSWGGHSDG-RDLWTYSSDYLSAFHAGGRRGLV----GESLRPDTWD---------------------AGGGCVLRGVEGEVFMAACLRLQRCWS
          RN   + G  +    +   +   + +F    +  +V    G + R   W                      AG G V+R  +G    AA   L+   S
Subjt:  NLRNIMSWGGHSDG-RDLWTYSSDYLSAFHAGGRRGLV----GESLRPDTWD---------------------AGGGCVLRGVEGEVFMAACLRLQRCWS

Query:  VDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPTK
        V +AE  A+  G+++A++      + E+DSL ++ +++ +   ++E+G L+ D +  L  + N +  +SPR  N  AH LA LA    + V W+D+ P +
Subjt:  VDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPTK

Query:  I
        I
Subjt:  I

XP_030939975.1 uncharacterized protein LOC115964883 [Quercus lobata]

1.9e-53

28.38

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGF+++ELFN  ML KQ WR++ +  SL   V K ++FP    L+  +    S+ W+++L  R ++  G +WRIG+G S  I G  WLP+ FS +V S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  AP--------------------------------------SLPFD-----------STESDFFSVSGGWNEGVQ----DRPSPSNPDRMRAWWAGLWRLN
                                                SLP              T + +++    +   +Q      P  SNP   + +W  LW LN
Subjt:  AP--------------------------------------SLPFD-----------STESDFFSVSGGWNEGVQ----DRPSPSNPDRMRAWWAGLWRLN

Query:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMW---------LCSKFASFHRPFSQFRFEDIIEAMKDRLVGADF
        VP+K+R F+WR  +D LPTK NLLKR +   + C  C G+ ED +H  W C ++K +W         L  KFASFH         D+++ +  + +    
Subjt:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMW---------LCSKFASFHRPFSQFRFEDIIEAMKDRLVGADF

Query:  ELVVVFWWSVWNLRNIMSWGGHS-DGRDLWTYSSDYLSAFHAGGRRGLVGESLRP----------------------------DTWDAGGGCVLRGVEGE
        EL     WS+W+ RN    G  S     ++  + + L  FH+      V E  RP                            D   AG G V+R  EG 
Subjt:  ELVVVFWWSVWNLRNIMSWGGHS-DGRDLWTYSSDYLSAFHAGGRRGLVGESLRP----------------------------DTWDAGGGCVLRGVEGE

Query:  VFMAACLRLQRCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFS
        V  A   R+    +V   E  A  R +  A+++G +  V E DS  + K+L  E   ++  G ++D+ R +   + +    ++ RQGNKVA  LA LA +
Subjt:  VFMAACLRLQRCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFS

Query:  -HSDRVWIDKWPTKISDALRCDVVS
         +  +VW+++    +++ +  D +S
Subjt:  -HSDRVWIDKWPTKISDALRCDVVS

TrEMBL top hits

e value

%identity

Alignment

A0A251NPF0 Reverse transcriptase domain-containing protein

1.1e-59

31.05

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGFR++E FNQ +LAKQ WR+L+   SL+  + + RY P + FLEAE+G+ PSF+WR+L WG+ELL +G RWR+G+G S  +Y   WLP     ++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV
         P LP  +   D F+ SG WN                                                 G++       P    D    +W  +W L +
Subjt:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV

Query:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV
        P+K++FF+WR   D LP    L  R +  + +C  C   AE  LH  W C   K +W  S + +    +    F ++  A++    G +  L     W +
Subjt:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV

Query:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG
        WN RN   + G S+           L    SD  +  H   GR+      L   RP     + D+  G G V+R   GE FMAAC+ R+   +     E 
Subjt:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG

Query:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT
         A + G++ A  MGF   ++E D+   L  I   E ++      + EV  L+++FR ++  W       +PR GNKVAH LA  AF  ++ V WI++ P+
Subjt:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT

Query:  KISDALRCDVVS
         +   L  DV+S
Subjt:  KISDALRCDVVS

A0A5E4FZN9 PREDICTED: retrotransposon

6.5e-60

30.1

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGFR++E FNQ +LAKQ WR+L+   SL+  + + RY P + FLEAE+G+ PSF+WR+L WG+ELL +G RWR+GNG S  +Y   WLP     ++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFSVSGGWNEGV-------------------------------------------------QDRPS--PS-NPDRMRAWWAGLWRLNV
         P LP  +   D F+ SG WN  +                                                 +D+ S  PS   D    +W  +W L +
Subjt:  APSLPFDSTESDFFSVSGGWNEGV-------------------------------------------------QDRPS--PS-NPDRMRAWWAGLWRLNV

Query:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV
        P+K++FF+WR   D LP    L  R +  + +C  C   AE  LH  W C   K +W  S + +    +    F ++  A++    G +  L     W +
Subjt:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV

Query:  WNLRNIMSWGGHSD----------------------GRDLWTYSSDYLSAFH------AGGRRGLVGESLRPDTWDAGGGCVLRGVEGEVFMAACL-RLQ
        WN RN   + G S+                         +    S   +  H      AG  +  V  +++      G G V+R   GE FMAAC+ R+Q
Subjt:  WNLRNIMSWGGHSD----------------------GRDLWTYSSDYLSAFH------AGGRRGLVGESLRPDTWDAGGGCVLRGVEGEVFMAACL-RLQ

Query:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDK
          +     E  A + G++ A  MGF   V+E D+   +  +          GLL+++   +LH +      ++PR GNKVAH LA  AF  ++ V WI++
Subjt:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDK

Query:  WPTKISDALRCDVVS
         P  +   L  DV+S
Subjt:  WPTKISDALRCDVVS

A0A6J1DAR4 uncharacterized protein LOC111018954

8.0e-74

31.53

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GG+GFR++ELFN+ +LAKQ WR+L   +S+L  VLKGRYF    F+EA++   PS++WR++LWGR+LL +G RWRIGNG S  IYG NW+PN+ +L++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFS-VSGGWNEGV-----------------------QDR-----------------------------PSPSNPDRMRAWWAGLWRLN
        +P LP  S  S       GGW   V                       +DR                             PS S+ + +R WW G W+++
Subjt:  APSLPFDSTESDFFS-VSGGWNEGV-----------------------QDR-----------------------------PSPSNPDRMRAWWAGLWRLN

Query:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWS
        +P+K++ F+WRL  DRLPT  NL KRG+ +++ C  C  + ED +HLFW C   +++W+ SKF     PF       I+    + L  ADFE + V  W 
Subjt:  VPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWS

Query:  VWNLRNIMSWGGHSD-----GRDLWTYSSDYLSAFHAGGRRGLVGE-----------------------SLRPDTWDAGGGCVLRGVEGEVFMAACLRLQ
        +WN RN  ++   +      G +L  +++ Y   F       + G                        S       AG G ++    G+V  AA   L+
Subjt:  VWNLRNIMSWGGHSD-----GRDLWTYSSDYLSAFHAGGRRGLVGE-----------------------SLRPDTWDAGGGCVLRGVEGEVFMAACLRLQ

Query:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDK
           SVD+AE  A + G+QLA ++G                +H  L D+SE G ++   +      ++    +  R+GNK AH+LA  A   H   +W++ 
Subjt:  RCWSVDLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDK

Query:  WPTKISDALRCDVVSSM
        WP ++   L  + +  +
Subjt:  WPTKISDALRCDVVSSM

A0A803QSN3 Uncharacterized protein

7.2e-59

28.91

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL--PNEFSLQV
        GG+GF+++E FNQ +LAKQ W+++ + SSLL  VLK  YF    F+EA+LG   SF+WR++LWGR+++ RG RWR+  GR   I    WL  P+ F+L+ 
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL--PNEFSLQV

Query:  QS--------------------------------------AP-------SLPFDSTESDFFSVSGGWNEGVQD--RPSPSNPDRMRAWWAGLWRLNVPSK
         +                                      AP        L +D T +  ++VS G+     +     PS+ +  + WW  +W+L VP K
Subjt:  QS--------------------------------------AP-------SLPFDSTESDFFSVSGGWNEGVQD--RPSPSNPDRMRAWWAGLWRLNVPSK

Query:  LRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFE--DIIEAMKDRLVGADFELVVVFWWSVW
        +R F WRL++  +P  + L  RG+ +   C  C  + E   H  W CP +K +W   +     +  ++++ E   ++ A+K +   ADF + ++  W +W
Subjt:  LRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFE--DIIEAMKDRLVGADFELVVVFWWSVW

Query:  NLRNIMSWGGHSDGRDLW----TYSSDYLSAFHAGGRRGL---------------------VGESLRPDTWDAGGGCVLRGVEGEVFMAACLRLQRCWSV
        N RN      HS   +LW        D +   H+   + L                        S+    W  G G V+R  EG V  A   + + C+SV
Subjt:  NLRNIMSWGGHSDGRDLW----TYSSDYLSAFHAGGRRGL---------------------VGESLRPDTWDAGGGCVLRGVEGEVFMAACLRLQRCWSV

Query:  DLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDKWPTKI
        +LAE  A+  G+QLA ++    F+++TD L     L+G+ H  ++   L+DD R      +   V +  R+ NK AH+LA  A  ++ + +W+ ++P   
Subjt:  DLAEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLA-FSHSDRVWIDKWPTKI

Query:  SDALRCDVVSSM
        S  L  D+ + M
Subjt:  SDALRCDVVSSM

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

1.1e-59

31.05

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS
        GGLGFR++E FNQ +LAKQ WR+L+   SL+  + + RY P + FLEAE+G+ PSF+WR+L WG+ELL +G RWR+G+G S  +Y   WLP     ++ S
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQS

Query:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV
         P LP  +   D F+ SG WN                                                 G++       P    D    +W  +W L +
Subjt:  APSLPFDSTESDFFSVSGGWN------------------------------------------------EGVQDRPSPSNP----DRMRAWWAGLWRLNV

Query:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV
        P+K++FF+WR   D LP    L  R +  + +C  C   AE  LH  W C   K +W  S + +    +    F ++  A++    G +  L     W +
Subjt:  PSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGADFELVVVFWWSV

Query:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG
        WN RN   + G S+           L    SD  +  H   GR+      L   RP     + D+  G G V+R   GE FMAAC+ R+   +     E 
Subjt:  WNLRNIMSWGGHSDG--------RDLWTYSSDYLSAFHA-GGRRGLVGESL---RP----DTWDA--GGGCVLRGVEGEVFMAACL-RLQRCWSVDLAEG

Query:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT
         A + G++ A  MGF   ++E D+   L  I   E ++      + EV  L+++FR ++  W       +PR GNKVAH LA  AF  ++ V WI++ P+
Subjt:  WAVLRGVQLAQQMGFEGFVVETDSLS-LVKILHGELHD------VSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRV-WIDKWPT

Query:  KISDALRCDVVS
         +   L  DV+S
Subjt:  KISDALRCDVVS

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

4.7e-15

22.22

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRP----SFVWRNLLWG-RELLVRGCRWRIGNGRSTPIYGSNWLPNEFS
        GGLG R  +  N+ +++K  WR+LQ+ +SL   VL+ +Y   +G +       P    S  WR++  G R+++  G  W  G+G+    +   W+  +  
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRP----SFVWRNLLWG-RELLVRGCRWRIGNGRSTPIYGSNWLPNEFS

Query:  LQVQSA--PSLPFDSTESDFFSVSGGWN------------------------EGVQDR-------------------------PSPSNPDRMRAWWAGLW
        L++ +   P+        D +    GW+                         G +DR                         P P+    M +++  LW
Subjt:  LQVQSA--PSLPFDSTESDFFSVSGGWN------------------------EGVQDR-------------------------PSPSNPDRMRAWWAGLW

Query:  RLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRP---FSQFRFEDIIEAMKDRLVGADFE--
        ++ VP +++ F+W + +  + T+    +R L+ S++C +C G  E  LH+  +CP    +W+  +     R    FS+  FE + + + DR    D    
Subjt:  RLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRP---FSQFRFEDIIEAMKDRLVGADFE--

Query:  --LVVVFWWSVWNLRNIMSWGGHSDGRDLWTYSSDY-LSAFHAGGRRGLVG
            V+ WW  W  R    +G ++  RD   +  ++ +  + A     LVG
Subjt:  --LVVVFWWSVWNLRNIMSWGGHSDGRDLWTYSSDY-LSAFHAGGRRGLVG

P93295 Uncharacterized mitochondrial protein AtMg00310

6.0e-18

43.75

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSL
        GGLGFR++  FNQ +LAKQ +R++    +LL  +L+ RYFP    +E  +G+RPS+ WR+++ GRELL RG    IG+G  T ++   W+ +E  L
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSL

Arabidopsis top hits

e value

%identity

Alignment

AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.5e-08

23.27

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Query:  LLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL-------------PNEFSLQVQSAPSLPFDSTESDFFSV
        LL S L   +  +  F      +  S++WR L   RE+        +G+G +   +  NW              P    L + +   +  D    D F  
Subjt:  LLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL-------------PNEFSLQVQSAPSLPFDSTESDFFSV

Query:  SGGWNEGVQDRPSPSN-------------PDRMRAWWAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKS
           W     D  +PSN              + +  W+  +W  N   K  F  W +  +RL T+  L   GL++ ++C+LC+   E   HLF+ CP   +
Subjt:  SGGWNEGVQDRPSPSN-------------PDRMRAWWAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKS

Query:  MW
        +W
Subjt:  MW

AT2G02650.1 Ribonuclease H-like superfamily protein

2.1e-10

25.37

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Query:  RPSPSNPDRMRAWWAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFED--
        +P P + +  +A    +W+L+V  K++ F+WR     L T   L  R ++   +C  C  + E   H+ +NCP  +S+W  +     ++      FED  
Subjt:  RPSPSNPDRMRAWWAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFED--

Query:  --IIEAMKDRLVGADFELVVVFW--WSVWNLRNI
          +I+  K +   +  +  + FW  W +W  RN+
Subjt:  --IIEAMKDRLVGADFELVVVFW--WSVWNLRNI

AT3G25270.1 Ribonuclease H-like superfamily protein

1.8e-09

21.97

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Query:  AGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGAD---
        A +W+L    K++ F+W+L    L T  NL +R +     C  C  + E   HLF++C   + +W  S       P  + R   I    K  L+ +    
Subjt:  AGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQFRFEDIIEAMKDRLVGAD---

Query:  ------FELVVVFWWSVWNLRN-------IMSW-----GGHSDGRDLWTYSSDYL--------SAFHAGGRRGLVGESLRPDTW--------------DA
              F L +   W +W  RN        +SW        +D ++ W  ++ Y+        S+ H             P TW              +A
Subjt:  ------FELVVVFWWSVWNLRN-------IMSW-----GGHSDGRDLWTYSSDYL--------SAFHAGGRRGLVGESLRPDTW--------------DA

Query:  GGGCVLRGVEGEVFMAACLRLQRCWSVDL-AEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILH------GELHDVSEVGLLMDDFRGILHPWVNDRVL
          G ++R   G V+M +   +    S  L +E  A++  +Q A   G+   + E DS  + ++++      G  + + E       F   +  WV     
Subjt:  GGGCVLRGVEGEVFMAACLRLQRCWSVDL-AEGWAVLRGVQLAQQMGFEGFVVETDSLSLVKILH------GELHDVSEVGLLMDDFRGILHPWVNDRVL

Query:  YSPRQGNKVAHVLA
          PR  N+ A +LA
Subjt:  YSPRQGNKVAHVLA

AT4G29090.1 Ribonuclease H-like superfamily protein

4.4e-24

26.77

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL---PNEFSLQ
        GG+GF+++E FN  +L KQ WR+L    SL+  V K RYF +   L A LGSRPSFVW+++   +E+L +G R  +GNG    I+   WL   P   +L+
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWL---PNEFSLQ

Query:  VQSAP-----------------------------------------------------SLPFDSTESDFFSVSGGW---NEGVQDRPSPS--NPDRMRAW
        +Q  P                                                     S  +D T S  ++V  G+    + +  R SP   +   +   
Subjt:  VQSAP-----------------------------------------------------SLPFDSTESDFFSVSGGW---NEGVQDRPSPS--NPDRMRAW

Query:  WAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCS
        +  +W+     K++ F+W+   + LP    L  R L+  S C+ C    E   HL + C   +  W  S
Subjt:  WAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCS

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

4.2e-19

43.75

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Query:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSL
        GGLGFR++  FNQ +LAKQ +R++    +LL  +L+ RYFP    +E  +G+RPS+ WR+++ GRELL RG    IG+G  T ++   W+ +E  L
Subjt:  GGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTGGGTTGGGGTTTCGCAATATGGAACTTTTCAACCAAGGCATGTTGGCCAAGCAGTACTGGCGTGTCCTCCAAGACCTCTCTTCTCTATTGTGTTCTGTGCTCAA
GGGTCGCTATTTTCCTCGGATAGGGTTCTTGGAGGCAGAACTTGGGTCGCGTCCGTCGTTTGTCTGGCGCAACTTGTTATGGGGGCGGGAGCTCTTAGTCCGAGGTTGTC
GCTGGAGGATCGGTAACGGGCGATCTACGCCCATTTATGGTTCAAACTGGCTGCCAAACGAGTTCTCTCTTCAGGTACAGTCGGCTCCATCGCTTCCTTTTGATAGTACG
GAAAGTGACTTTTTTTCTGTGTCTGGTGGATGGAACGAGGGGGTCCAGGACCGGCCTTCCCCTTCGAACCCTGATAGAATGAGGGCGTGGTGGGCTGGTCTTTGGAGACT
GAATGTGCCTAGTAAGCTCAGGTTTTTCATCTGGCGACTGTTCCATGACCGTTTGCCAACTAAGGTAAACCTTCTCAAGCGCGGGCTTAATGTTTCGAGTCTGTGTGTTT
TGTGCAGTGGGGATGCGGAGGATTGTCTTCACCTGTTCTGGAATTGCCCTGTGGTCAAGAGTATGTGGTTGTGCTCCAAGTTTGCTTCTTTTCATCGACCCTTCTCCCAA
TTCAGGTTCGAGGATATCATTGAGGCGATGAAGGACAGGCTAGTAGGGGCAGATTTTGAGCTGGTGGTTGTCTTTTGGTGGTCTGTATGGAATCTGCGTAACATCATGAG
CTGGGGTGGCCATTCAGACGGTCGGGATCTATGGACATACTCGAGTGATTACCTTAGTGCCTTCCATGCTGGTGGGAGGCGTGGCCTAGTAGGGGAATCCTTACGGCCTG
ACACATGGGATGCTGGAGGTGGCTGTGTTCTGCGTGGGGTAGAGGGTGAGGTCTTTATGGCGGCTTGTTTGAGATTACAGAGGTGTTGGAGCGTGGATCTGGCTGAGGGT
TGGGCGGTGCTTAGAGGGGTCCAGCTTGCTCAGCAGATGGGGTTTGAAGGATTTGTAGTGGAGACAGACTCGTTGAGTTTGGTCAAGATTCTCCATGGTGAGCTGCATGA
TGTCTCGGAAGTGGGGTTGCTGATGGATGATTTTCGAGGGATTCTCCACCCTTGGGTCAATGACAGGGTTTTGTATTCGCCACGTCAGGGGAATAAGGTGGCACATGTTT
TGGCTAGCTTGGCCTTTTCGCACAGTGACCGTGTTTGGATTGACAAATGGCCTACCAAAATTTCTGATGCTCTACGGTGTGATGTTGTTTCGTCCATGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGGLGFRNMELFNQGMLAKQYWRVLQDLSSLLCSVLKGRYFPRIGFLEAELGSRPSFVWRNLLWGRELLVRGCRWRIGNGRSTPIYGSNWLPNEFSLQVQSAPSLPFDST
ESDFFSVSGGWNEGVQDRPSPSNPDRMRAWWAGLWRLNVPSKLRFFIWRLFHDRLPTKVNLLKRGLNVSSLCVLCSGDAEDCLHLFWNCPVVKSMWLCSKFASFHRPFSQ
FRFEDIIEAMKDRLVGADFELVVVFWWSVWNLRNIMSWGGHSDGRDLWTYSSDYLSAFHAGGRRGLVGESLRPDTWDAGGGCVLRGVEGEVFMAACLRLQRCWSVDLAEG
WAVLRGVQLAQQMGFEGFVVETDSLSLVKILHGELHDVSEVGLLMDDFRGILHPWVNDRVLYSPRQGNKVAHVLASLAFSHSDRVWIDKWPTKISDALRCDVVSSM

Lag0026214 (gene) of Sponge gourd (AG-4) v1 genome