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Lag0026217 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026217
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:32527021..32527887
RNA-Seq ExpressionLag0026217
SyntenyLag0026217
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0786739.1 hypothetical protein [Gossypium trilobum]2.9e-0430Show/hide
Query:  SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGA
        S N  +H+R I         I +YL + +    K   F+ +    +   S  E  I+  DVAF   NS S  GLV+RD+ G +KA++ +     SSP  A
Subjt:  SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGA

Query:  EAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK
        EA A LE   L   + + ++ I+ DS  +I       +C + +        +IKD +S K
Subjt:  EAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK

TXG57539.1 hypothetical protein EZV62_015368 [Acer yangbiense]2.9e-0436.36Show/hide
Query:  FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVI
        F ++ DVA        G G+V+RD  G +  A  L   G  S   AEA A+ EGL LAK   +H+L+I SDSL++++   GE+   S +   + DI ++
Subjt:  FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVI

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]5.3e-0628.67Show/hide
Query:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEK----DIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPL
        NS  H   +     +C WI++Y  +Y QA    R   Q         R +  +     +++D A   T  ++G+GL++RD FG L  A+ +  P   +PL
Subjt:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEK----DIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPL

Query:  GAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMW
         AE   +LE L LA S     L + SD    I+ + G+L      +  +W
Subjt:  GAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMW

XP_026433777.1 uncharacterized protein LOC113331264 [Papaver somniferum]5.0e-0426.9Show/hide
Query:  WKKLWKMRVPSKVKCAKRKWRPQIMPCF--------SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFI-LHTDVAF
        WK LWK +VP KVK    K    I+P           V+ W     I +++  C      L D +Q +        SE+  +      + ++ ++ D  F
Subjt:  WKKLWKMRVPSKVKCAKRKWRPQIMPCF--------SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFI-LHTDVAF

Query:  MGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYIN
               G+GL++RD  G+ K  +     G  +P  AE VA++E +  AK L ++N+ + SD  +++  IN
Subjt:  MGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYIN

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]2.9e-0435.09Show/hide
Query:  INTYLADYKQANP---KGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVV
        + T+LADY++A P    G + I S+  I+    +     ++ D A    +S  GIG++ RD  G   A++ +C PG  +PL AE++A  E L  AKSL  
Subjt:  INTYLADYKQANP---KGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVV

Query:  HNLTILSDSLSLIQ
        H++ +  DSL +I+
Subjt:  HNLTILSDSLSLIQ

TrEMBL top hitse value%identityAlignment
A0A5C7HL89 RNase H domain-containing protein1.4e-0436.36Show/hide
Query:  FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVI
        F ++ DVA        G G+V+RD  G +  A  L   G  S   AEA A+ EGL LAK   +H+L+I SDSL++++   GE+   S +   + DI ++
Subjt:  FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVI

A0A5C7ITL2 RNase H domain-containing protein4.1e-0425Show/hide
Query:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEE--------FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGC
        N ++H + +  V    +W N ++ D++ AN     F++++K +  ++S   +        F +++D A    +  SG+G V+RD  G ++A+       C
Subjt:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEE--------FILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGC

Query:  SSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDI
          P  AE +A+L G  LA  L +    + SD+LS+++ +  +    S +   + DI
Subjt:  SSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDI

A0A6J1BQ49 uncharacterized protein LOC1110047862.6e-0628.67Show/hide
Query:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEK----DIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPL
        NS  H   +     +C WI++Y  +Y QA    R   Q         R +  +     +++D A   T  ++G+GL++RD FG L  A+ +  P   +PL
Subjt:  NSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEK----DIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPL

Query:  GAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMW
         AE   +LE L LA S     L + SD    I+ + G+L      +  +W
Subjt:  GAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMW

A0A7J8P308 RNase H domain-containing protein4.1e-0425.71Show/hide
Query:  INTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNL
        I  Y+++  +A  +G+  + S +  + ++ +G   + H DVAF    S S  GL++ ++ G + A+Q +       P  A+A A L+ + L  SL ++ +
Subjt:  INTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNL

Query:  TILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK
         ++ DS ++I+      +C S I+       +I+D ++RK
Subjt:  TILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK

A0A7J9FN68 RNase H domain-containing protein1.4e-0430Show/hide
Query:  SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGA
        S N  +H+R I         I +YL + +    K   F+ +    +   S  E  I+  DVAF   NS S  GLV+RD+ G +KA++ +     SSP  A
Subjt:  SVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFMGTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGA

Query:  EAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK
        EA A LE   L   + + ++ I+ DS  +I       +C + +        +IKD +S K
Subjt:  EAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAATTGTCAAGTGGCTTTGTTGTCAGAGGTTGGTCGGGAGTCCAATTGGTGGAAAAAACTATGGAAGATGAGGGTGCCTAGCAAAGTGAAGTGTGCCAAGAGGAA
ATGGAGACCACAGATCATGCCCTGTTTTAGTGTAAATAGTTGGATTCACAAGCGTCCAATCCCTGATGTAGTGTCTCAGTGTGAATGGATAAACACATATTTGGCTGATT
ACAAGCAGGCAAATCCGAAAGGTAGGGCTTTCATCCAATCCGAAAAAGATATTCGAGATATCATTTCCAAGGGAGAAGAGTTCATTTTACATACCGACGTTGCCTTTATG
GGAACTAATAGCACAAGTGGAATTGGGTTAGTATTACGAGATAAATTTGGTAATCTAAAGGCAGCTCAGATATTATGTCCACCGGGTTGTTCCTCTCCTTTAGGAGCGGA
AGCGGTAGCAGTACTTGAGGGTCTCTGTCTGGCTAAGTCCTTAGTTGTGCATAATTTAACGATATTATCTGATTCTCTATCGTTAATCCAATATATTAATGGAGAGCTTC
AGTGTGATTCTCGCATAGTCACGACAATGTGGGATATAGGAGTTATCAAGGACTCTCGTTCACGAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAATTGTCAAGTGGCTTTGTTGTCAGAGGTTGGTCGGGAGTCCAATTGGTGGAAAAAACTATGGAAGATGAGGGTGCCTAGCAAAGTGAAGTGTGCCAAGAGGAA
ATGGAGACCACAGATCATGCCCTGTTTTAGTGTAAATAGTTGGATTCACAAGCGTCCAATCCCTGATGTAGTGTCTCAGTGTGAATGGATAAACACATATTTGGCTGATT
ACAAGCAGGCAAATCCGAAAGGTAGGGCTTTCATCCAATCCGAAAAAGATATTCGAGATATCATTTCCAAGGGAGAAGAGTTCATTTTACATACCGACGTTGCCTTTATG
GGAACTAATAGCACAAGTGGAATTGGGTTAGTATTACGAGATAAATTTGGTAATCTAAAGGCAGCTCAGATATTATGTCCACCGGGTTGTTCCTCTCCTTTAGGAGCGGA
AGCGGTAGCAGTACTTGAGGGTCTCTGTCTGGCTAAGTCCTTAGTTGTGCATAATTTAACGATATTATCTGATTCTCTATCGTTAATCCAATATATTAATGGAGAGCTTC
AGTGTGATTCTCGCATAGTCACGACAATGTGGGATATAGGAGTTATCAAGGACTCTCGTTCACGAAAGTGA
Protein sequenceShow/hide protein sequence
MMNCQVALLSEVGRESNWWKKLWKMRVPSKVKCAKRKWRPQIMPCFSVNSWIHKRPIPDVVSQCEWINTYLADYKQANPKGRAFIQSEKDIRDIISKGEEFILHTDVAFM
GTNSTSGIGLVLRDKFGNLKAAQILCPPGCSSPLGAEAVAVLEGLCLAKSLVVHNLTILSDSLSLIQYINGELQCDSRIVTTMWDIGVIKDSRSRK