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Lag0026220 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026220
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase
Genome locationchr10:32640045..32641679
RNA-Seq ExpressionLag0026220
SyntenyLag0026220
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035840.1 integrase [Cucumis melo var. makuwa]1.9e-2873.4Show/hide
Query:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
        S+ NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L++QQL EL++ RKKDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
KAA0051603.1 integrase [Cucumis melo var. makuwa]6.0e-3071.84Show/hide
Query:  VSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTA
        ++E RL M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RKKDKKALFFIYQAVDE IFERIS A++A
Subjt:  VSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTA

Query:  KAA
        KAA
Subjt:  KAA
KAA0060690.1 integrase [Cucumis melo var. makuwa]4.1e-3173.33Show/hide
Query:  QVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGAS
        QVVSE +L M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RKKDKKALFFIYQAVDE IFERIS A+
Subjt:  QVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGAS

Query:  TAKAA
        +AKAA
Subjt:  TAKAA
TXG68966.1 hypothetical protein EZV62_003901 [Acer yangbiense]9.9e-3378.72Show/hide
Query:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
        S+NNMLQPQLPRF+GKNY RWSQQMKVLYGSQDLW+++ENG+VE E + GL+QQQ NELK+  KKDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
TYK16225.1 integrase [Cucumis melo var. makuwa]1.3e-3264.62Show/hide
Query:  LSPSGDQRARCLESDYYRGLIDVSNQVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARK
        +  + +  ARCL+     GL+    QVVSE RL M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RK
Subjt:  LSPSGDQRARCLESDYYRGLIDVSNQVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARK

Query:  KDKKALFFIYQAVDENIFERISGASTAKAA
        KDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  KDKKALFFIYQAVDENIFERISGASTAKAA
TrEMBL top hitse value%identityAlignment
A0A5A7SXS2 Integrase9.3e-2973.4Show/hide
Query:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
        S+ NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L++QQL EL++ RKKDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
A0A5A7U6S3 Integrase2.9e-3071.84Show/hide
Query:  VSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTA
        ++E RL M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RKKDKKALFFIYQAVDE IFERIS A++A
Subjt:  VSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTA

Query:  KAA
        KAA
Subjt:  KAA
A0A5A7V047 Integrase2.0e-3173.33Show/hide
Query:  QVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGAS
        QVVSE +L M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RKKDKKALFFIYQAVDE IFERIS A+
Subjt:  QVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGAS

Query:  TAKAA
        +AKAA
Subjt:  TAKAA
A0A5C7IKI5 gag_pre-integrs domain-containing protein4.8e-3378.72Show/hide
Query:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
        S+NNMLQPQLPRF+GKNY RWSQQMKVLYGSQDLW+++ENG+VE E + GL+QQQ NELK+  KKDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  SSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA
A0A5D3CXM6 Integrase6.2e-3364.62Show/hide
Query:  LSPSGDQRARCLESDYYRGLIDVSNQVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARK
        +  + +  ARCL+     GL+    QVVSE RL M+SN NMLQPQLPRF GKN+ +WS QMKVLYGSQ+LWDIVE GY E E +  L+ QQL EL++ RK
Subjt:  LSPSGDQRARCLESDYYRGLIDVSNQVVSERRLKMSSN-NMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARK

Query:  KDKKALFFIYQAVDENIFERISGASTAKAA
        KDKKALFFIYQAVDE IFERIS A++AKAA
Subjt:  KDKKALFFIYQAVDENIFERISGASTAKAA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein3.3e-1848.39Show/hide
Query:  MSSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAK
        M+SNN +  Q+P     NY  WS +MK + G+ D+W+IVE G++E E E  LSQ Q + L+D+RK+DKKAL  IYQ +DE+ FE++  A++AK
Subjt:  MSSNNMLQPQLPRFEGKNYRRWSQQMKVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAGATTGGAGAAGAAATGAAGAAGAAAGTAGAAATGAAGAAAAAGAAGAAAGAAGTTGAAGAAAGAAACGAAGAAGATGAAGAGGTAGAAGCGGCTAGGGTTGG
AGGTGTGCCTCGCTTCACTTGGGCGTCACCTTTTTATCGCCTCTCGCCTTCAGGCGATCAAAGGGCTCGTTGCCTCGAGAGTGATTATTATCGTGGGCTCATCGACGTTT
CCAACCAAGTGGTATCAGAGCGAAGGTTGAAGATGTCATCCAACAATATGTTGCAACCTCAACTTCCTCGTTTTGAAGGAAAGAATTATAGACGATGGAGTCAACAAATG
AAAGTTCTTTATGGATCTCAAGATCTTTGGGACATTGTTGAAAATGGATATGTGGAGCAAGAACGTGAGGAAGGTCTTTCACAACAACAACTCAATGAGTTGAAAGATGC
TAGAAAGAAAGACAAGAAGGCATTATTTTTTATCTACCAAGCTGTAGATGAAAATATTTTCGAAAGAATTTCAGGAGCCTCAACTGCTAAAGCAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAGATTGGAGAAGAAATGAAGAAGAAAGTAGAAATGAAGAAAAAGAAGAAAGAAGTTGAAGAAAGAAACGAAGAAGATGAAGAGGTAGAAGCGGCTAGGGTTGG
AGGTGTGCCTCGCTTCACTTGGGCGTCACCTTTTTATCGCCTCTCGCCTTCAGGCGATCAAAGGGCTCGTTGCCTCGAGAGTGATTATTATCGTGGGCTCATCGACGTTT
CCAACCAAGTGGTATCAGAGCGAAGGTTGAAGATGTCATCCAACAATATGTTGCAACCTCAACTTCCTCGTTTTGAAGGAAAGAATTATAGACGATGGAGTCAACAAATG
AAAGTTCTTTATGGATCTCAAGATCTTTGGGACATTGTTGAAAATGGATATGTGGAGCAAGAACGTGAGGAAGGTCTTTCACAACAACAACTCAATGAGTTGAAAGATGC
TAGAAAGAAAGACAAGAAGGCATTATTTTTTATCTACCAAGCTGTAGATGAAAATATTTTCGAAAGAATTTCAGGAGCCTCAACTGCTAAAGCAGCATGA
Protein sequenceShow/hide protein sequence
MNKIGEEMKKKVEMKKKKKEVEERNEEDEEVEAARVGGVPRFTWASPFYRLSPSGDQRARCLESDYYRGLIDVSNQVVSERRLKMSSNNMLQPQLPRFEGKNYRRWSQQM
KVLYGSQDLWDIVENGYVEQEREEGLSQQQLNELKDARKKDKKALFFIYQAVDENIFERISGASTAKAA