| GenBank top hits | e value | %identity | Alignment |
|---|
| AAT44257.1 putative polyprotein [Oryza sativa Japonica Group] | 1.3e-33 | 60 | Show/hide |
Query: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
K + PS RYKARLVAKG++Q G+D+ ++FSP+++HSSIRTLLS+V V D Q+DVKT FLHGEL E IYM+QP G + G +N V+ LKKSLYG
Subjt: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
Query: LRKAPRQWYIKFDSFMLSRGFTRSN
L+++PRQWY +FDSFM S+ F RSN
Subjt: LRKAPRQWYIKFDSFMLSRGFTRSN
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| CAJ86151.1 H0413E07.4 [Oryza sativa] | 1.3e-33 | 61.6 | Show/hide |
Query: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
K + PS RYKARLVAKG++Q G+D+ +IFSP+V+HSSIRTLLS+V + D Q+DVKT FLHGEL E IYM+QP G + G +N V LKKSLYG
Subjt: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
Query: LRKAPRQWYIKFDSFMLSRGFTRSN
L+++PRQWY +FDSFMLS+ F RSN
Subjt: LRKAPRQWYIKFDSFMLSRGFTRSN
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| KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] | 9.7e-34 | 59.85 | Show/hide |
Query: QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIK
+L +S Y + P S+P RYKARLVAKG+TQKEGVD+ EIFSP+VRHSSIR +LS+V+ FD Q+DV TTFLHGEL E IYM QP G KG +
Subjt: QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIK
Query: NQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN
+ VF L KSLYGL+++PRQWYI+FD+F+L +GF R++
Subjt: NQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN
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| KAD4178669.1 hypothetical protein E3N88_27260 [Mikania micrantha] | 5.7e-34 | 63.48 | Show/hide |
Query: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ +V+D QLDVKT FLHG L E IYM+QP+G + +G +N+V LLKKSLYGL+++PRQWY
Subjt: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
Query: KFDSFMLSRGFTRSN
+FD M+ GF RSN
Subjt: KFDSFMLSRGFTRSN
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| KAD7478277.1 hypothetical protein E3N88_01413 [Mikania micrantha] | 2.0e-34 | 65.22 | Show/hide |
Query: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ V D QLDVKTTFLHG L E IYM+QP+G + KG +++V LLKKSLYGL+++PRQWY
Subjt: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
Query: KFDSFMLSRGFTRSN
+FD +M+S GF RSN
Subjt: KFDSFMLSRGFTRSN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class | 4.7e-34 | 59.85 | Show/hide |
Query: QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIK
+L +S Y + P S+P RYKARLVAKG+TQKEGVD+ EIFSP+VRHSSIR +LS+V+ FD Q+DV TTFLHGEL E IYM QP G KG +
Subjt: QLQRSNVKYSVDP-----SQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIK
Query: NQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN
+ VF L KSLYGL+++PRQWYI+FD+F+L +GF R++
Subjt: NQVFLLKKSLYGLRKAPRQWYIKFDSFMLSRGFTRSN
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| A0A5N6MW65 Integrase catalytic domain-containing protein | 2.8e-34 | 63.48 | Show/hide |
Query: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ +V+D QLDVKT FLHG L E IYM+QP+G + +G +N+V LLKKSLYGL+++PRQWY
Subjt: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
Query: KFDSFMLSRGFTRSN
+FD M+ GF RSN
Subjt: KFDSFMLSRGFTRSN
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| A0A5N6Q2D8 Reverse transcriptase Ty1/copia-type domain-containing protein | 9.5e-35 | 65.22 | Show/hide |
Query: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
RYKARLVAKGFTQ+EG+DY EIFSP+V+H+SIR +L++ V D QLDVKTTFLHG L E IYM+QP+G + KG +++V LLKKSLYGL+++PRQWY
Subjt: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
Query: KFDSFMLSRGFTRSN
+FD +M+S GF RSN
Subjt: KFDSFMLSRGFTRSN
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| Q25A71 H0306F03.15 protein | 6.1e-34 | 61.6 | Show/hide |
Query: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
K + PS RYKARLVAKG++Q G+D+ +IFSP+V+HSSIRTLLS+V + D Q+DVKT FLHGEL E IYM+QP G + G +N V LKKSLYG
Subjt: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
Query: LRKAPRQWYIKFDSFMLSRGFTRSN
L+++PRQWY +FDSFMLS+ F RSN
Subjt: LRKAPRQWYIKFDSFMLSRGFTRSN
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| Q25A78 H0413E07.4 protein | 6.1e-34 | 61.6 | Show/hide |
Query: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
K + PS RYKARLVAKG++Q G+D+ +IFSP+V+HSSIRTLLS+V + D Q+DVKT FLHGEL E IYM+QP G + G +N V LKKSLYG
Subjt: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
Query: LRKAPRQWYIKFDSFMLSRGFTRSN
L+++PRQWY +FDSFMLS+ F RSN
Subjt: LRKAPRQWYIKFDSFMLSRGFTRSN
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.6e-21 | 46.09 | Show/hide |
Query: NVKYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSL
+VKY+ + PIRYKARLVA+GFTQK +DY E F+P+ R SS R +LSLVI ++ Q+DVKT FL+G L E IYM+ P G+ + V L K++
Subjt: NVKYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSL
Query: YGLRKAPRQWYIKFDSFMLSRGFTRSNL
YGL++A R W+ F+ + F S++
Subjt: YGLRKAPRQWYIKFDSFMLSRGFTRSNL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-31 | 60 | Show/hide |
Query: IRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWY
+RYKARLV KGF QK+G+D+ EIFSP+V+ +SIRT+LSL D QLDVKT FLHG+L E IYM+QP G G K+ V L KSLYGL++APRQWY
Subjt: IRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVIVFD----QLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWY
Query: IKFDSFMLSRGFTRS
+KFDSFM S+ + ++
Subjt: IKFDSFMLSRGFTRS
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| Q07163 Transposon TyH3 Gag-Pol polyprotein | 3.3e-08 | 28.67 | Show/hide |
Query: YKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIK
+KAR VA+G Q + S V H ++ T LSL + QLD+ + +L+ ++ E +Y++ P L G+ +++ LKKSLYGL+++ WY
Subjt: YKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYIK
Query: FDSFMLSRGFTRSNLVKGLKFRNSVKRKCNW-DQFVNWIKTTRTNPNHLE
S+++ + F+NS C + D V + K +N +E
Subjt: FDSFMLSRGFTRSNLVKGLKFRNSVKRKCNW-DQFVNWIKTTRTNPNHLE
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.5e-24 | 46.77 | Show/hide |
Query: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
KY+ D S RYKARLVAKG+ Q+ G+DY E FSP+++ +SIR +L + + QLDV FL G L++ +YM QP G I K N V L+K+LYG
Subjt: KYSVDPSQPIRYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYG
Query: LRKAPRQWYIKFDSFMLSRGFTRS
L++APR WY++ +++L+ GF S
Subjt: LRKAPRQWYIKFDSFMLSRGFTRS
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.7e-23 | 44.74 | Show/hide |
Query: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
RYKARLVAKG+ Q+ G+DY E FSP+++ +SIR +L + + QLDV FL G L++ +YM QP G + K + V L+K++YGL++APR WY+
Subjt: RYKARLVAKGFTQKEGVDYGEIFSPIVRHSSIRTLLSLVI----VFDQLDVKTTFLHGELSETIYMQQPMGLISKGIKNQVFLLKKSLYGLRKAPRQWYI
Query: KFDSFMLSRGFTRS
+ +++L+ GF S
Subjt: KFDSFMLSRGFTRS
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