; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026250 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026250
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr10:33218271..33219027
RNA-Seq ExpressionLag0026250
SyntenyLag0026250
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-6162.5Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLHD LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL V DTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-6262.5Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-6263Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLHD LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

KAA0048364.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-6666.84Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESV---TTSELPRCVRWNIH
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V    T +  RC+RW++H
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESV---TTSELPRCVRWNIH

Query:  QGQCCCC-----QCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
        + Q         + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  QGQCCCC-----QCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-6162Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+ HDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein2.5e-6162.5Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLHD LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL V DTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

A0A5A7TXW1 Retrotransposon protein1.3e-6263Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLHD LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

A0A5A7TZ93 Retrotransposon protein1.5e-6666.84Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESV---TTSELPRCVRWNIH
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V    T +  RC+RW++H
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESV---TTSELPRCVRWNIH

Query:  QGQCCCC-----QCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
        + Q         + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  QGQCCCC-----QCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

A0A5A7U9H2 Retrotransposon protein1.1e-6162Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+ HDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

A0A5D3BDX0 Retrotransposon protein3.9e-6262.5Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------
        MD+RCFAILC LL+T+AGL+STEVVDVEEMV MFLHI+AHDVKNRV++ +F R  E +SRHFN VL AV+RLH+ LLKKP+ V      +  RW      
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRW------

Query:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
                 N+        + R   +ATNVL VCDTKGDF +VL GWEG A DSRILRD++SRPNRL VPKGYYYL DAGYP AEGFLAPYRG+RYHL E
Subjt:  ---------NIHQGQCCCCQCRLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.0e-1830.05Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVR-----W-
        M   CF  LC +L+T   L  T  + +EE V MFL I  H+   R V  +F R +E V R F  VL A   L    ++ P       +P  ++     W 
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVR-----W-

Query:  ------NIHQGQCCCCQC----------RLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKG-YYYLCDAGYPKAEGFLAPYR
                  G   C +           R D  + N++ +CD K  FT++  G  G   D+ +L+ +    +   +P    YYL D+GYP  +G LAPYR
Subjt:  ------NIHQGQCCCCQC----------RLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKG-YYYLCDAGYPKAEGFLAPYR

Query:  GE-----RYHLSE
               RYH+S+
Subjt:  GE-----RYHLSE

AT5G28730.1 unknown protein2.3e-1434.97Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRWNIHQGQ
        M    F  LC +L    GL S+  + ++E V +FL I A +   R +  +F   +E + R F+ VL A+ RL  V   +P  V   E  R +  N  Q  
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRWNIHQGQ

Query:  CCCCQCRLD--GIAT-NVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTV-PKGYYYLCDAGYPKAEGFLAPYRGE
               +D  GIA+ NVL +CD    FT+   G  G   D+R+L  +IS      V P   YYL D+GY    G+LAPYR E
Subjt:  CCCCQCRLD--GIAT-NVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTV-PKGYYYLCDAGYPKAEGFLAPYRGE

AT5G28950.1 unknown protein1.0e-0645.1Show/hide
Query:  RLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISR-PNRLTVPK
        R   I+ N+L  C+   +F +VL GWEG A DS++L D+++R  NRL VP+
Subjt:  RLDGIATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISR-PNRLTVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.7e-0945.9Show/hide
Query:  FTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE
        F +VL GWEG A DSR+L D++ +          +YL D G+     FLAP+RG RYHL E
Subjt:  FTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.0e-2234.2Show/hide
Query:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSE-----LPRCVRWN
        MDK  F  LC LL+T   L  T  + +E  + +FL I+ H+++ R V+  F    E +SRHFN VL+AV+ +     +   +  T E        CV   
Subjt:  MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSE-----LPRCVRWN

Query:  IHQGQCCCCQCRLD---------GIAT-NVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRG
        +           +D         G+ T NVL        F +VL GWEG A D ++L  +++R N+L VP+G YY+ D  YP   GF+APY G
Subjt:  IHQGQCCCCQCRLD---------GIAT-NVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAAGATGTTTTGCTATACTTTGCACCTTATTAAAAACAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGACATGTTCTTGCACAT
TGTAGCCCACGATGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGCCTAGGGAGATAGTTTCTAGGCATTTCAACACCGTCCTTCATGCGGTGTTACGATTGCATG
ATGTTCTCTTAAAAAAACCTGAGTCAGTCACAACCTCTGAATTGCCTCGATGCGTTAGATGGAACATACATCAAGGTCAATGTTGTTGTTGTCAATGCCGATTAGATGGT
ATTGCAACGAACGTGCTTGTTGTATGTGATACAAAAGGAGACTTCACATTCGTCTTACCAGGGTGGGAAGGGTATGCCGTTGATTCCCGGATTCTTAGAGATTCAATATC
AAGACCAAACAGACTCACAGTTCCAAAGGGCTATTATTATCTGTGCGATGCTGGGTACCCTAAGGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCT
CTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAAGATGTTTTGCTATACTTTGCACCTTATTAAAAACAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGACATGTTCTTGCACAT
TGTAGCCCACGATGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGCCTAGGGAGATAGTTTCTAGGCATTTCAACACCGTCCTTCATGCGGTGTTACGATTGCATG
ATGTTCTCTTAAAAAAACCTGAGTCAGTCACAACCTCTGAATTGCCTCGATGCGTTAGATGGAACATACATCAAGGTCAATGTTGTTGTTGTCAATGCCGATTAGATGGT
ATTGCAACGAACGTGCTTGTTGTATGTGATACAAAAGGAGACTTCACATTCGTCTTACCAGGGTGGGAAGGGTATGCCGTTGATTCCCGGATTCTTAGAGATTCAATATC
AAGACCAAACAGACTCACAGTTCCAAAGGGCTATTATTATCTGTGCGATGCTGGGTACCCTAAGGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCT
CTGAATGA
Protein sequenceShow/hide protein sequence
MDKRCFAILCTLLKTVAGLSSTEVVDVEEMVDMFLHIVAHDVKNRVVRTQFARPREIVSRHFNTVLHAVLRLHDVLLKKPESVTTSELPRCVRWNIHQGQCCCCQCRLDG
IATNVLVVCDTKGDFTFVLPGWEGYAVDSRILRDSISRPNRLTVPKGYYYLCDAGYPKAEGFLAPYRGERYHLSE