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Lag0026251 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026251
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr10:33219073..33219600
RNA-Seq ExpressionLag0026251
SyntenyLag0026251
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]1.2e-2549.28Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHIMAS
        MKH  ARN+IERA G+LKG                               REM + +I D +DEVDS   TT  ++I++I+TS+EWS+WRD LA  IM S
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHIMAS

Query:  SSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK
        SSR PKH WTK E A LVE L+ LV+AGGW SDNGTF+
Subjt:  SSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK

KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]8.9e-2143.54Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---
        MKHS ARN+IE+A G+LKG                               REM   +I D++DEVDS   T+  ++I++I+TS+EW+RWRD+L   +   
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---

Query:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK
              MASS R  KH WTK E A LVE L+ LV+AGGW SDNGTF+
Subjt:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-2250Show/hide
Query:  MKHSFARNMIERALGLLKGR--------EMGDREIPDELDEVDSALVTTD-GENINFIKTSDEWSRWRDELATHI-----MASSSRAPKHIWTKNEYAKL
        MKHS ARN+IERA G+LKGR        EM   +  ++ DE DS   TT   E+I +I+T++EWS+WRD+LA  +     M++S+RAP+H+WT+ E   L
Subjt:  MKHSFARNMIERALGLLKGR--------EMGDREIPDELDEVDSALVTTD-GENINFIKTSDEWSRWRDELATHI-----MASSSRAPKHIWTKNEYAKL

Query:  VESLMSLVHAGGWMSDNGTFKA
        VE LM LV  GGW SDNGTF++
Subjt:  VESLMSLVHAGGWMSDNGTFKA

TYK08812.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2252.59Show/hide
Query:  MKHSFARNMIERALGLLKGREMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---------MASSSRAPKHIWTKNEYAKLVESLM
        MKHS ARN+IERA G+LK          D++DEV S   TT  ++I++I+TS+EW+RW+D+LA  +         M SSSR PKH WTK E A LV+ LM
Subjt:  MKHSFARNMIERALGLLKGREMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---------MASSSRAPKHIWTKNEYAKLVESLM

Query:  SLVHAGGWMSDNGTFK
         LV+AGGW SDNGTF+
Subjt:  SLVHAGGWMSDNGTFK

TYK30259.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1842.66Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---
        MKHS ARN+IER  G+LKG                               REM   +I D +DEVDS  VT+  +++++I+TS+EW+RWRD+LA  +   
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---

Query:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDN
              MASSSR PKH WTK E   LVE L+ LV+AGG M+ N
Subjt:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDN

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein4.3e-2143.54Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---
        MKHS ARN+IE+A G+LKG                               REM   +I D++DEVDS   T+  ++I++I+TS+EW+RWRD+L   +   
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---

Query:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK
              MASS R  KH WTK E A LVE L+ LV+AGGW SDNGTF+
Subjt:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK

A0A5A7SYW1 Retrotransposon protein2.3e-2250Show/hide
Query:  MKHSFARNMIERALGLLKGR--------EMGDREIPDELDEVDSALVTTD-GENINFIKTSDEWSRWRDELATHI-----MASSSRAPKHIWTKNEYAKL
        MKHS ARN+IERA G+LKGR        EM   +  ++ DE DS   TT   E+I +I+T++EWS+WRD+LA  +     M++S+RAP+H+WT+ E   L
Subjt:  MKHSFARNMIERALGLLKGR--------EMGDREIPDELDEVDSALVTTD-GENINFIKTSDEWSRWRDELATHI-----MASSSRAPKHIWTKNEYAKL

Query:  VESLMSLVHAGGWMSDNGTFKA
        VE LM LV  GGW SDNGTF++
Subjt:  VESLMSLVHAGGWMSDNGTFKA

A0A5D3CBY3 Retrotransposon protein1.3e-2252.59Show/hide
Query:  MKHSFARNMIERALGLLKGREMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---------MASSSRAPKHIWTKNEYAKLVESLM
        MKHS ARN+IERA G+LK          D++DEV S   TT  ++I++I+TS+EW+RW+D+LA  +         M SSSR PKH WTK E A LV+ LM
Subjt:  MKHSFARNMIERALGLLKGREMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---------MASSSRAPKHIWTKNEYAKLVESLM

Query:  SLVHAGGWMSDNGTFK
         LV+AGGW SDNGTF+
Subjt:  SLVHAGGWMSDNGTFK

A0A5D3E392 Retrotransposon protein6.9e-1942.66Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---
        MKHS ARN+IER  G+LKG                               REM   +I D +DEVDS  VT+  +++++I+TS+EW+RWRD+LA  +   
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHI---

Query:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDN
              MASSSR PKH WTK E   LVE L+ LV+AGG M+ N
Subjt:  ------MASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDN

E5GCB5 Retrotransposon protein5.8e-2649.28Show/hide
Query:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHIMAS
        MKH  ARN+IERA G+LKG                               REM + +I D +DEVDS   TT  ++I++I+TS+EWS+WRD LA  IM S
Subjt:  MKHSFARNMIERALGLLKG-------------------------------REMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHIMAS

Query:  SSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK
        SSR PKH WTK E A LVE L+ LV+AGGW SDNGTF+
Subjt:  SSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATTCATTTGCGAGGAACATGATCGAGAGGGCACTCGGTTTGTTGAAAGGAAGAGAGATGGGTGATCGTGAAATTCCTGATGAGTTGGATGAGGTGGATTCTGC
TTTGGTTACAACTGATGGTGAGAATATCAATTTCATTAAGACTTCTGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAACACATATAATGGCCAGTTCGTCAAGAGCTC
CAAAACACATTTGGACAAAGAACGAGTACGCGAAGCTGGTGGAGTCCCTCATGTCCTTAGTTCATGCAGGTGGTTGGATGTCCGATAATGGGACATTCAAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATTCATTTGCGAGGAACATGATCGAGAGGGCACTCGGTTTGTTGAAAGGAAGAGAGATGGGTGATCGTGAAATTCCTGATGAGTTGGATGAGGTGGATTCTGC
TTTGGTTACAACTGATGGTGAGAATATCAATTTCATTAAGACTTCTGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAACACATATAATGGCCAGTTCGTCAAGAGCTC
CAAAACACATTTGGACAAAGAACGAGTACGCGAAGCTGGTGGAGTCCCTCATGTCCTTAGTTCATGCAGGTGGTTGGATGTCCGATAATGGGACATTCAAAGCTTAG
Protein sequenceShow/hide protein sequence
MKHSFARNMIERALGLLKGREMGDREIPDELDEVDSALVTTDGENINFIKTSDEWSRWRDELATHIMASSSRAPKHIWTKNEYAKLVESLMSLVHAGGWMSDNGTFKA