; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026264 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026264
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:33565030..33566379
RNA-Seq ExpressionLag0026264
SyntenyLag0026264
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU30401.1 hypothetical protein TSUD_364470 [Trifolium subterraneum]2.7e-0526.55Show/hide
Query:  DYEFTD--HELFLCNRAQGVWRILGLSDVVSPSS--QMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNE---------
        D E  D  H  F C  A+  W   GLS V+  ++  Q  + DR   I    S  ++GR ++  W IW++RN+ + +  V     +  +  +         
Subjt:  DYEFTD--HELFLCNRAQGVWRILGLSDVVSPSS--QMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNE---------

Query:  --YQGKSGQLVATMYEGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI
          ++  SG  +A M +      S +  EA A+L  ++   H  + R+   SDS  LI ++H + R   E  +I+ DI
Subjt:  --YQGKSGQLVATMYEGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI

KAF4375505.1 hypothetical protein F8388_024164 [Cannabis sativa]1.0e-0432.22Show/hide
Query:  YDDYEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNEY
        ++  E  +H LF CNRAQ VW    L      SS M I+D  +H+S + S+  L +  +  W IW +RN   H     +   L  +   Y
Subjt:  YDDYEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNEY

KAG7967769.1 hypothetical protein I3843_08G116200 [Carya illinoinensis]7.2e-0624.43Show/hide
Query:  TTLGQWNMDKLHQGLFKEDIEEIIRLPISLGALDKWIWHYDKYDDYEFTD--HELFLCNRAQGVWR--ILGLSDVVSPSSQMEIKDRWLHISKRASEADL
        ++ G WN+  L        +++I++L IS+   D   W ++K  +Y   +  H LF CN  + VW      L ++VS  S  ++ +       R S   L
Subjt:  TTLGQWNMDKLHQGLFKEDIEEIIRLPISLGALDKWIWHYDKYDDYEFTD--HELFLCNRAQGVWR--ILGLSDVVSPSSQMEIKDRWLHISKRASEADL

Query:  GRASVGAWAIWNDRN--------------------------------------NTVHHHPVPSTFYL---------YEYLNEYQG-----KSGQLVATMY
            V AW +WN RN                                      N V +   P   YL          +Y +   G      +G +V    
Subjt:  GRASVGAWAIWNDRN--------------------------------------NTVHHHPVPSTFYL---------YEYLNEYQG-----KSGQLVATMY

Query:  EGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI
        +     SSP  +EA+A+L GL+L +   V ++ + SDSL L++ L++ A+   E   I+ DI
Subjt:  EGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.4e-0432.97Show/hide
Query:  EFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPS----TFYLYEYLNEYQ
        E TDH LF C RA+ VW IL             ++D  L++ +  S  D     VG WAIWNDRN       +P     + ++  Y+ ++Q
Subjt:  EFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPS----TFYLYEYLNEYQ

XP_030483228.1 uncharacterized protein LOC115699823 [Cannabis sativa]1.8e-0429.91Show/hide
Query:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVH----HHPVPSTFYLYEYLNEYQGKSGQLVA
        +E   H +F C  A+ VW+I+G S        M+I+D     S+  ++ +L       W+IW+DRNN +H      P+        +LN Y  KS QL+ 
Subjt:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVH----HHPVPSTFYLYEYLNEYQGKSGQLVA

Query:  TMYEGTSICSSPLSVEA
        +++ G S  ++P + +A
Subjt:  TMYEGTSICSSPLSVEA

TrEMBL top hitse value%identityAlignment
A0A2Z6MEX5 CCHC-type domain-containing protein1.3e-0526.55Show/hide
Query:  DYEFTD--HELFLCNRAQGVWRILGLSDVVSPSS--QMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNE---------
        D E  D  H  F C  A+  W   GLS V+  ++  Q  + DR   I    S  ++GR ++  W IW++RN+ + +  V     +  +  +         
Subjt:  DYEFTD--HELFLCNRAQGVWRILGLSDVVSPSS--QMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLYEYLNE---------

Query:  --YQGKSGQLVATMYEGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI
          ++  SG  +A M +      S +  EA A+L  ++   H  + R+   SDS  LI ++H + R   E  +I+ DI
Subjt:  --YQGKSGQLVATMYEGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI

A0A803NGI9 Uncharacterized protein3.0e-1025Show/hide
Query:  VSDFITTLGQWNMDKLHQGLFKEDIEEIIRLPISLGAL-DKWIWHYDKYDDY------------------------------------------------
        VS +IT   +WN+  L +     D++ I+ +P+S  ++ D+WIWH+   ++Y                                                
Subjt:  VSDFITTLGQWNMDKLHQGLFKEDIEEIIRLPISLGAL-DKWIWHYDKYDDY------------------------------------------------

Query:  EFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHP
        E  +H LFLC  A+ VWR+ G+S      S+M   D  + +S   S +++ +     W +WNDRNN +H  P
Subjt:  EFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHP

A0A803P3Q4 Uncharacterized protein3.5e-0625.97Show/hide
Query:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLY----EYLNEYQGKSGQLVA
        YEF +H +FLC  A+ VW+  G+S      S+M+  D  + +S   + +++ +     W +WNDRNN +H  PV S   ++     Y   YQ  S     
Subjt:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHHPVPSTFYLY----EYLNEYQGKSGQLVA

Query:  TMYEGTSICSSP-----------LSVEAVAVLEGLK-----LVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI
        ++   T   ++P           ++V+A   +   K     ++ +   Q +  CS  L++ SI + R+ A      +V DI
Subjt:  TMYEGTSICSSP-----------LSVEAVAVLEGLK-----LVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDI

A0A803QBU0 Uncharacterized protein2.3e-0538.57Show/hide
Query:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVH
        +E T H LF C  A+ VWR LGLS   + ++ M+  D   H+S   +E ++ +     WAIW +RNN +H
Subjt:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVH

A0A803QCM2 Uncharacterized protein7.8e-0632.48Show/hide
Query:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHH--PVPSTFY--LYEYLNEYQGKSGQLVA
        +E   H LF C  A+ VW+I+G S     +  M+I+D    IS+  ++++L       W+IW+DRNN +H      P+  Y     +LN Y  KS QL+ 
Subjt:  YEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGAWAIWNDRNNTVHHH--PVPSTFY--LYEYLNEYQGKSGQLVA

Query:  TMYEGTSICSSPLSVEA
         ++ G S  ++P + +A
Subjt:  TMYEGTSICSSPLSVEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTTTCAGATTTCATAACAACGTTAGGCCAATGGAATATGGATAAGCTCCATCAGGGACTATTCAAGGAGGATATTGAAGAAATTATTCGGTTACCTATCAGTCT
TGGTGCTCTTGATAAATGGATTTGGCACTATGACAAATACGATGATTATGAATTCACGGACCATGAGCTCTTTTTGTGTAATAGGGCTCAGGGCGTTTGGAGGATTTTGG
GACTATCGGATGTGGTCAGTCCAAGTTCACAAATGGAGATTAAAGACAGATGGCTCCACATTTCTAAACGGGCCTCTGAGGCCGATCTTGGAAGAGCTAGTGTCGGGGCA
TGGGCTATTTGGAATGATAGAAATAACACAGTCCATCATCATCCAGTTCCTTCTACTTTTTATCTATATGAGTATCTGAACGAGTACCAGGGTAAGAGTGGTCAGCTAGT
GGCAACTATGTATGAGGGGACTTCTATTTGCTCCAGTCCTTTGAGTGTGGAGGCAGTAGCTGTTCTAGAAGGACTCAAGTTGGTATCTCATTGTCAAGTCCAACGTTTGA
CTATTTGCTCGGACTCACTCTCTTTGATTTCCATTCTGCATAAACGAGCACGTGCTACTGTGGAATGTGCTACGATCGTGTGGGATATTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTTTCAGATTTCATAACAACGTTAGGCCAATGGAATATGGATAAGCTCCATCAGGGACTATTCAAGGAGGATATTGAAGAAATTATTCGGTTACCTATCAGTCT
TGGTGCTCTTGATAAATGGATTTGGCACTATGACAAATACGATGATTATGAATTCACGGACCATGAGCTCTTTTTGTGTAATAGGGCTCAGGGCGTTTGGAGGATTTTGG
GACTATCGGATGTGGTCAGTCCAAGTTCACAAATGGAGATTAAAGACAGATGGCTCCACATTTCTAAACGGGCCTCTGAGGCCGATCTTGGAAGAGCTAGTGTCGGGGCA
TGGGCTATTTGGAATGATAGAAATAACACAGTCCATCATCATCCAGTTCCTTCTACTTTTTATCTATATGAGTATCTGAACGAGTACCAGGGTAAGAGTGGTCAGCTAGT
GGCAACTATGTATGAGGGGACTTCTATTTGCTCCAGTCCTTTGAGTGTGGAGGCAGTAGCTGTTCTAGAAGGACTCAAGTTGGTATCTCATTGTCAAGTCCAACGTTTGA
CTATTTGCTCGGACTCACTCTCTTTGATTTCCATTCTGCATAAACGAGCACGTGCTACTGTGGAATGTGCTACGATCGTGTGGGATATTGATTGA
Protein sequenceShow/hide protein sequence
MWVSDFITTLGQWNMDKLHQGLFKEDIEEIIRLPISLGALDKWIWHYDKYDDYEFTDHELFLCNRAQGVWRILGLSDVVSPSSQMEIKDRWLHISKRASEADLGRASVGA
WAIWNDRNNTVHHHPVPSTFYLYEYLNEYQGKSGQLVATMYEGTSICSSPLSVEAVAVLEGLKLVSHCQVQRLTICSDSLSLISILHKRARATVECATIVWDID