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Lag0026270 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026270
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:33667689..33668126
RNA-Seq ExpressionLag0026270
SyntenyLag0026270
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054564.1 uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa]9.8e-3157.76Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        M + LSGKNK G +   IKKP  G+LL+ W+CN+ +  SWIINSISKEI  S+ Y G  K VWD LKE Y Q+NGP IYQLR+ LVT T G++SI+ YY 
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSIN
        KITTIW++ V+ R +N
Subjt:  KITTIWKDFVDNRSIN

KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]8.0e-4156.55Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        ML+A+SG+NKAG + GKI+KP  G LL  W CNN I  SWI+NS+SKEI  SI Y G  K +WD L++R+ Q+NGP IYQLRK  VT   G ++I++YYT
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
        K+ TIW++  + R  N CT  G+KP ID+LE E++M FLMGLNDS
Subjt:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

XP_022145891.1 uncharacterized protein LOC111015239 [Momordica charantia]2.1e-4158.62Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        MLIALSGKNK G ++G IKKP +G+LL  W+CNN I TSWIINS+SKEI  SI YTG AK++WD LKER+ Q++ P I+QLRK LVTT  GT+SI++YYT
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
        K+ T+W++  D R    CT  G+K + ++ + E+VM FLMGLN+S
Subjt:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

XP_038888312.1 uncharacterized protein LOC120078158 [Benincasa hispida]4.2e-3459.66Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        M + LSGKNK G + G I+KP  GSL + W+CNN + TSWIINS+SKEI VS+ Y G  K +WD LKERYHQ+NGP IYQLRK L TTT G +S++ YY 
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCT
        KITTIW++ V+ R  + CT
Subjt:  KITTIWKDFVDNRSINTCT

XP_038894602.1 uncharacterized protein LOC120083117 [Benincasa hispida]8.8e-4061.59Show/hide
Query:  KNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYTKITTIWK
        + +A  V G IKKP  G+LL  WQCNN + TSWIINSISKEI VS+ YTG  K++WD LKERY Q+NGP +YQLRK LVTT   T+SI++YY K TTIWK
Subjt:  KNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYTKITTIWK

Query:  DFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
          V+   I+ CT  GMK ++++L  EFVMIFLMGLNDS
Subjt:  DFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

TrEMBL top hitse value%identityAlignment
A0A151RFB2 Uncharacterized protein3.7e-2840.69Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        ++IAL  +NK G V+G I KP   + L+ W+ N+ I  SW++NS++K+I  S+ Y+  A  +W+ L  RY Q NGP ++QL+K + +   G MS+  Y+ 
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
        KI ++W++  D +  ++CT  G+KP+++YL +E VM FLMGLN++
Subjt:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

A0A151RKK2 Uncharacterized protein2.2e-2844.14Show/hide
Query:  MLIALSGKNKAGLVNGKIKKP-ESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYY
        +L+AL GKNK G V+G I KP E+     +WQ NN I  SW++NSISK++  S+ Y+  A  +W+ L+ R+ Q NGP ++QLR+ L+T    + SI  Y+
Subjt:  MLIALSGKNKAGLVNGKIKKP-ESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYY

Query:  TKITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLND
        TK+   W++  + + ++TC   G+K  IDY +YE+VM+FLMGLN+
Subjt:  TKITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLND

A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 83.9e-4156.55Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        ML+A+SG+NKAG + GKI+KP  G LL  W CNN I  SWI+NS+SKEI  SI Y G  K +WD L++R+ Q+NGP IYQLRK  VT   G ++I++YYT
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
        K+ TIW++  + R  N CT  G+KP ID+LE E++M FLMGLNDS
Subjt:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

A0A5D3D9Z1 Retrotrans_gag domain-containing protein4.7e-3157.76Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        M + LSGKNK G +   IKKP  G+LL+ W+CN+ +  SWIINSISKEI  S+ Y G  K VWD LKE Y Q+NGP IYQLR+ LVT T G++SI+ YY 
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSIN
        KITTIW++ V+ R +N
Subjt:  KITTIWKDFVDNRSIN

A0A6J1CXR2 uncharacterized protein LOC1110152391.0e-4158.62Show/hide
Query:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT
        MLIALSGKNK G ++G IKKP +G+LL  W+CNN I TSWIINS+SKEI  SI YTG AK++WD LKER+ Q++ P I+QLRK LVTT  GT+SI++YYT
Subjt:  MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYT

Query:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS
        K+ T+W++  D R    CT  G+K + ++ + E+VM FLMGLN+S
Subjt:  KITTIWKDFVDNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7.8e-1028.78Show/hide
Query:  KAGLVNGKIKKPESGS-LLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYTKITTIWKD
        K G ++G + KP+  S L   W+  N +   W++NS++ ++  S+ Y   A  +W+ L+  +       IYQLR+ L T   G  S++ Y+ K++ +W +
Subjt:  KAGLVNGKIKKPESGS-LLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYTKITTIWKD

Query:  FVDNRSI-----NTCTYEGMKPVIDYLEYEFVMIFLMGL
          +   I       C  E  K   +  E E    FLMGL
Subjt:  FVDNRSI-----NTCTYEGMKPVIDYLEYEFVMIFLMGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATAGCTCTTTCTGGAAAGAATAAAGCGGGTCTTGTTAATGGTAAGATTAAGAAACCCGAATCTGGAAGTCTTCTCACAACATGGCAATGCAACAATGGCATCAA
CACATCTTGGATAATTAATTCTATCTCGAAAGAAATTACTGTGAGTATCAAATATACTGGTTTTGCGAAAAATGTATGGGATGTTTTGAAGGAGCGTTATCATCAGACCA
ATGGTCCATTAATCTACCAGCTTCGAAAGCATTTGGTTACAACTACGCTAGGAACGATGTCTATTAAGAGTTACTACACCAAGATTACGACCATATGGAAAGATTTTGTA
GACAATAGGTCTATCAATACTTGCACCTACGAAGGAATGAAACCAGTAATAGATTATCTTGAATATGAATTTGTCATGATTTTTCTTATGGGGTTAAATGACTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAATAGCTCTTTCTGGAAAGAATAAAGCGGGTCTTGTTAATGGTAAGATTAAGAAACCCGAATCTGGAAGTCTTCTCACAACATGGCAATGCAACAATGGCATCAA
CACATCTTGGATAATTAATTCTATCTCGAAAGAAATTACTGTGAGTATCAAATATACTGGTTTTGCGAAAAATGTATGGGATGTTTTGAAGGAGCGTTATCATCAGACCA
ATGGTCCATTAATCTACCAGCTTCGAAAGCATTTGGTTACAACTACGCTAGGAACGATGTCTATTAAGAGTTACTACACCAAGATTACGACCATATGGAAAGATTTTGTA
GACAATAGGTCTATCAATACTTGCACCTACGAAGGAATGAAACCAGTAATAGATTATCTTGAATATGAATTTGTCATGATTTTTCTTATGGGGTTAAATGACTCTTAG
Protein sequenceShow/hide protein sequence
MLIALSGKNKAGLVNGKIKKPESGSLLTTWQCNNGINTSWIINSISKEITVSIKYTGFAKNVWDVLKERYHQTNGPLIYQLRKHLVTTTLGTMSIKSYYTKITTIWKDFV
DNRSINTCTYEGMKPVIDYLEYEFVMIFLMGLNDS