; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026292 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026292
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:34039646..34040362
RNA-Seq ExpressionLag0026292
SyntenyLag0026292
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018821989.1 uncharacterized protein LOC108992010 [Juglans regia]2.3e-1630.46Show/hide
Query:  MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQ-------GSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLE
        + K+W  +WKMK+P KI+++ WKA+K  LP  ++L+        SFID  LK+  ++  + LE   + CW++W+ RN  + E        K + +++ L 
Subjt:  MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQ-------GSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLE

Query:  SFWRANICSNPKG-SGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLAL
                +  KG   +     S +     W +PP G +KLN D A S      GIG + R+  GE+++A+A         + +E  AIL G++L L
Subjt:  SFWRANICSNPKG-SGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLAL

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]2.3e-1625.74Show/hide
Query:  NKIWNNLWKMKIPNKIKLYCWKALKNSLP-----------------------------------------------NYEDLQGSFIDRWLKIDAHS-TLK
        +K W + W +++P KIK++ W+ + ++LP                                               +++     +   +LK  A S T  
Subjt:  NKIWNNLWKMKIPNKIKLYCWKALKNSLP-----------------------------------------------NYEDLQGSFIDRWLKIDAHS-TLK

Query:  ELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICR
        E E +  T W IWS+RN++VH +    AS  + +  +YL+++  A +   P  +  +Q  S S    A W  PP G  KLN DAA   +  K+G+G + R
Subjt:  ELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICR

Query:  NENGEIMVASASSFDGISAAHMIELKAILEGMRLALE
        N  G+++ A +    G  A+H +E KA+  G+   L+
Subjt:  NENGEIMVASASSFDGISAAHMIELKAILEGMRLALE

XP_030505962.1 uncharacterized protein LOC115720894 [Cannabis sativa]2.6e-1525.97Show/hide
Query:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE
        W   W +K+P+K+K++ WKA   ++P    L                                                +  F D  + +    T  E+E
Subjt:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE

Query:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQA--VSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRN
         +  T W +W+DRN  +H +  P+ S   IW K        A  C+    S I  +  +S+     + W  PP    K+N DAAC +S  K+G+G I RN
Subjt:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQA--VSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRN

Query:  ENGEIMVASASSFDGISAAHMIELKAILEGM
         +G+I+ A + SF G   +  +E KA+L G+
Subjt:  ENGEIMVASASSFDGISAAHMIELKAILEGM

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]9.8e-1526.99Show/hide
Query:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE
        W+N WK+K+P K++++ WK    SLP   +L                                                + S  D  L +    +  ELE
Subjt:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE

Query:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPK-----GSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPI
        L  + CW+IW +RN I H  S+   +  + +   YL  F +A    N K     G+      SS  I    W++PP G  KLN+DAA       +GIG +
Subjt:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPK-----GSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPI

Query:  CRNENGEIMVASASSFDGISAAHMIE
         RN +G I+ A +  F G   A  +E
Subjt:  CRNENGEIMVASASSFDGISAAHMIE

XP_030936552.1 uncharacterized protein LOC115961769 [Quercus lobata]1.3e-1425.96Show/hide
Query:  IWNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKEL
        +W  LW + +P KIK++ W+A  N LP  E +                                                + SF+D  L + +HSTL++L
Subjt:  IWNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKEL

Query:  ELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNE
        EL   T WAIWS+RN IVH++      +  + +     S      CS     G+ +  SS       WS PP G +K+N D A S       +G + R+ 
Subjt:  ELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNE

Query:  NGEIMVASASSFDGISAAHMIELKAILEGMRLALE
        NG+++ A         +  + E+ A+ +G+  A E
Subjt:  NGEIMVASASSFDGISAAHMIELKAILEGMRLALE

TrEMBL top hitse value%identityAlignment
A0A2I4ERH4 uncharacterized protein LOC1089920101.1e-1630.46Show/hide
Query:  MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQ-------GSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLE
        + K+W  +WKMK+P KI+++ WKA+K  LP  ++L+        SFID  LK+  ++  + LE   + CW++W+ RN  + E        K + +++ L 
Subjt:  MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQ-------GSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLE

Query:  SFWRANICSNPKG-SGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLAL
                +  KG   +     S +     W +PP G +KLN D A S      GIG + R+  GE+++A+A         + +E  AIL G++L L
Subjt:  SFWRANICSNPKG-SGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLAL

A0A7N2R3V3 Uncharacterized protein3.0e-1730Show/hide
Query:  IWNNLWKMKIPNKIKLYCWKALKNSLPNYED-----------------------LQGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPL
        +W   WK+KIPNK+K++ W+A  N+LP  ++                       LQ SF++   K+      +  EL  +  W IW  RN +VH   +  
Subjt:  IWNNLWKMKIPNKIKLYCWKALKNSLPNYED-----------------------LQGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPL

Query:  ASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKA
         SI +   KE+LE F         + S I  +V      P+ W  PP G +KLN DAA    PP  G G + RNEN ++M + +        +   EL A
Subjt:  ASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKA

Query:  ILEGMRLALE
            ++ A+E
Subjt:  ILEGMRLALE

A0A803NI87 Uncharacterized protein1.3e-1525.97Show/hide
Query:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE
        W   W +K+P+K+K++ WKA   ++P    L                                                +  F D  + +    T  E+E
Subjt:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDL------------------------------------------------QGSFIDRWLKIDAHSTLKELE

Query:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQA--VSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRN
         +  T W +W+DRN  +H +  P+ S   IW K        A  C+    S I  +  +S+     + W  PP    K+N DAAC +S  K+G+G I RN
Subjt:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQA--VSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRN

Query:  ENGEIMVASASSFDGISAAHMIELKAILEGM
         +G+I+ A + SF G   +  +E KA+L G+
Subjt:  ENGEIMVASASSFDGISAAHMIELKAILEGM

A0A803P623 Uncharacterized protein1.1e-1625.74Show/hide
Query:  NKIWNNLWKMKIPNKIKLYCWKALKNSLP-----------------------------------------------NYEDLQGSFIDRWLKIDAHS-TLK
        +K W + W +++P KIK++ W+ + ++LP                                               +++     +   +LK  A S T  
Subjt:  NKIWNNLWKMKIPNKIKLYCWKALKNSLP-----------------------------------------------NYEDLQGSFIDRWLKIDAHS-TLK

Query:  ELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICR
        E E +  T W IWS+RN++VH +    AS  + +  +YL+++  A +   P  +  +Q  S S    A W  PP G  KLN DAA   +  K+G+G + R
Subjt:  ELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICR

Query:  NENGEIMVASASSFDGISAAHMIELKAILEGMRLALE
        N  G+++ A +    G  A+H +E KA+  G+   L+
Subjt:  NENGEIMVASASSFDGISAAHMIELKAILEGMRLALE

A0A803QEQ9 Uncharacterized protein1.6e-1527.16Show/hide
Query:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQGSFI---------------------------DRW---------------------LKIDAHSTLKELE
        W   WK+ +P+K++++ WK   N LP   +L    I                           + W                     L   A+S+ +E E
Subjt:  WNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQGSFI---------------------------DRW---------------------LKIDAHSTLKELE

Query:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGS-------GINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIG
        L    CW+IW +RN   H +   LA+   ++  +YL  +  A+  +    S        +N    +SL+ P  W +PP G WKLN+DAAC+ S   +GIG
Subjt:  LVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGS-------GINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIG

Query:  PICRNENGEIMVASASSFDGISAAHMIELKAI
         + R+ NG I  A + SF G   A  +E  A+
Subjt:  PICRNENGEIMVASASSFDGISAAHMIELKAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0523.81Show/hide
Query:  LVTITCWAIWSDRNKIVHE-ESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNE
        LV    W +W  RN+++ + +      +    ++++ E   R  +     G  + + +S        W +PP  + K N+DA   +  P+ GIG I RNE
Subjt:  LVTITCWAIWSDRNKIVHE-ESIPLASIKSIWIKEYLESFWRANICSNPKGSGINQAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNE

Query:  NGEIMVASASSFDGISAAHMIELKAI
        +G ++   A +          EL+A+
Subjt:  NGEIMVASASSFDGISAAHMIELKAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAATATGGAATAACTTGTGGAAGATGAAAATCCCTAATAAGATCAAACTTTATTGCTGGAAAGCCCTCAAGAATTCTTTGCCTAACTATGAGGATCTTCAAGG
AAGTTTCATTGATAGATGGCTGAAGATAGACGCGCATTCCACGTTGAAGGAGCTCGAACTAGTCACGATCACCTGTTGGGCCATATGGAGTGATAGAAACAAAATTGTCC
ATGAGGAATCGATACCTCTGGCTAGCATCAAGAGCATTTGGATTAAAGAGTACCTGGAGTCGTTCTGGCGAGCAAATATTTGTTCAAACCCCAAAGGATCTGGAATTAAT
CAAGCAGTTTCTTCATCTTTGATTCTCCCTGCATGTTGGTCCTCTCCCCCGTGTGGCTTCTGGAAATTAAACTCTGATGCCGCATGCTCAATTTCTCCTCCAAAGGTTGG
AATAGGCCCGATTTGTAGAAATGAAAATGGAGAAATAATGGTTGCCTCAGCTTCCTCTTTCGATGGTATCTCAGCAGCCCATATGATCGAATTAAAAGCAATATTGGAAG
GGATGAGATTGGCACTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAATATGGAATAACTTGTGGAAGATGAAAATCCCTAATAAGATCAAACTTTATTGCTGGAAAGCCCTCAAGAATTCTTTGCCTAACTATGAGGATCTTCAAGG
AAGTTTCATTGATAGATGGCTGAAGATAGACGCGCATTCCACGTTGAAGGAGCTCGAACTAGTCACGATCACCTGTTGGGCCATATGGAGTGATAGAAACAAAATTGTCC
ATGAGGAATCGATACCTCTGGCTAGCATCAAGAGCATTTGGATTAAAGAGTACCTGGAGTCGTTCTGGCGAGCAAATATTTGTTCAAACCCCAAAGGATCTGGAATTAAT
CAAGCAGTTTCTTCATCTTTGATTCTCCCTGCATGTTGGTCCTCTCCCCCGTGTGGCTTCTGGAAATTAAACTCTGATGCCGCATGCTCAATTTCTCCTCCAAAGGTTGG
AATAGGCCCGATTTGTAGAAATGAAAATGGAGAAATAATGGTTGCCTCAGCTTCCTCTTTCGATGGTATCTCAGCAGCCCATATGATCGAATTAAAAGCAATATTGGAAG
GGATGAGATTGGCACTGGAGTGA
Protein sequenceShow/hide protein sequence
MNKIWNNLWKMKIPNKIKLYCWKALKNSLPNYEDLQGSFIDRWLKIDAHSTLKELELVTITCWAIWSDRNKIVHEESIPLASIKSIWIKEYLESFWRANICSNPKGSGIN
QAVSSSLILPACWSSPPCGFWKLNSDAACSISPPKVGIGPICRNENGEIMVASASSFDGISAAHMIELKAILEGMRLALE