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Lag0026296 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026296
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr10:34116038..34119103
RNA-Seq ExpressionLag0026296
SyntenyLag0026296
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1208173.1 40S ribosomal protein S13 [Morella rubra]3.4e-0960.32Show/hide
Query:  MLLEDGLNVYWSGDWSLDAILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ++L D   +   G  +   IL  L  A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKF
Subjt:  MLLEDGLNVYWSGDWSLDAILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

KEH29093.1 cytoplasmic ribosomal protein S13 [Medicago truncatula]9.0e-1087.18Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKFSS
        A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKFSS
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKFSS

QHO25128.1 40S ribosomal protein [Arachis hypogaea]3.4e-0972.73Show/hide
Query:  ILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ++ ++  A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKF
Subjt:  ILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

XP_021865686.1 40S ribosomal protein S13-like [Spinacia oleracea]2.6e-0986.49Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ATGLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

XP_029116152.1 40S ribosomal protein S13 isoform X1 [Elaeis guineensis]2.0e-0971.11Show/hide
Query:  ILTYLCLA-TGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        +L ++C+   GLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ILTYLCLA-TGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

TrEMBL top hitse value%identityAlignment
A0A072UJ10 Cytoplasmic ribosomal protein S134.3e-1087.18Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKFSS
        A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKFSS
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKFSS

A0A0K9RB08 Ribosomal_S13_N domain-containing protein1.3e-0986.49Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ATGLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

A0A6A1VG93 40S ribosomal protein S131.7e-0960.32Show/hide
Query:  MLLEDGLNVYWSGDWSLDAILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ++L D   +   G  +   IL  L  A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKF
Subjt:  MLLEDGLNVYWSGDWSLDAILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

A0A7S4MIG9 Hypothetical protein1.7e-0974.42Show/hide
Query:  LTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        L  L  A GLAPK+PED+YHL+K+A+S+RKHLERNRKDKDSKF
Subjt:  LTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

A0A803LZ74 Uncharacterized protein1.7e-0983.78Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        ATGLAP+IPED+YHLIK+A+++RKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-12.2e-1183.78Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A GLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

P59224 40S ribosomal protein S13-22.2e-1183.78Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A GLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

P62299 40S ribosomal protein S136.5e-1178.38Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A G+AP+IPED+YHLIK+A++IRKHLERNRKDKDSK+
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

P62300 40S ribosomal protein S136.5e-1178.38Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A G+AP+IPED+YHLIK+A++IRKHLERNRKDKDSK+
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

P62302 40S ribosomal protein S131.0e-1186.49Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A GLAP+IPED+YHLIK+A+SIRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.6e-1283.78Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A GLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF

AT4G00100.1 ribosomal protein S13A1.6e-1283.78Show/hide
Query:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF
        A GLAP+IPED+YHLIK+A++IRKHLERNRKDKDSKF
Subjt:  ATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTTCTGGATTGTGTTATGTTATTGGAGGATGGGCTAAATGTCTATTGGAGTGGTGATTGGAGTTTGGATGCGATTCTGACTTATTTGTGTTTAGCCACT
GGACTGGCTCCTAAAATCCCAGAGGATATTTATCATCTCATCAAGGAAGCTATTTCAATCCGAAAGCATTTGGAGAGAAATAGGAAAGACAAGGATTCCAAATTC
AGCTCGCCATCGGAATGGTGTCCGGCCTTTGGCCCTGGTCGGCCTCGGCATTGGGCCGAGGCCGACCCTATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCATC
ACAACCGAAGGGTCGAGTTGGGCTCCGGCCCTTCGTTCTTCTTCATCTTGGCCTCCTCTACCTTCTGGGCCGGCTCTCCGGGGCCCATCCTGCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTTCTGGATTGTGTTATGTTATTGGAGGATGGGCTAAATGTCTATTGGAGTGGTGATTGGAGTTTGGATGCGATTCTGACTTATTTGTGTTTAGCCACT
GGACTGGCTCCTAAAATCCCAGAGGATATTTATCATCTCATCAAGGAAGCTATTTCAATCCGAAAGCATTTGGAGAGAAATAGGAAAGACAAGGATTCCAAATTC
AGCTCGCCATCGGAATGGTGTCCGGCCTTTGGCCCTGGTCGGCCTCGGCATTGGGCCGAGGCCGACCCTATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCATC
ACAACCGAAGGGTCGAGTTGGGCTCCGGCCCTTCGTTCTTCTTCATCTTGGCCTCCTCTACCTTCTGGGCCGGCTCTCCGGGGCCCATCCTGCACATAA
Protein sequenceShow/hide protein sequence
MTVLDCVMLLEDGLNVYWSGDWSLDAILTYLCLATGLAPKIPEDIYHLIKEAISIRKHLERNRKDKDSKFSSPSEWCPAFGPGRPRHWAEADPMLGLSLRMRPSI
TTEGSSWAPALRSSSSWPPLPSGPALRGPSCT