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Lag0026328 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026328
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:34910117..34910545
RNA-Seq ExpressionLag0026328
SyntenyLag0026328
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON90597.1 Ribonuclease H-like domain containing protein [Trema orientale]1.9e-0732.14Show/hide
Query:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDD-RNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRG--GWMPPVGGELKLNFDASVRPA
        ++ +  RL    FEL+ V  WSIWN RN+  + G++ D  +   W+Q YL +F++      ++   +V + + ++ G  GW  PV GELKLN + SV   
Subjt:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDD-RNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRG--GWMPPVGGELKLNFDASVRPA

Query:  TSEAG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALI
        +S  G    IRD  GV+L         CW + +  G+ ++
Subjt:  TSEAG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALI

TXG68182.1 hypothetical protein EZV62_003117 [Acer yangbiense]6.7e-0835.25Show/hide
Query:  SLLDFELVI--VFWWSIWNLRNSWCWG--GLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-G
        SL D EL +  +FWW IW LRN+ C G  G+ DD +   W + +L  F  A      + CL  +S +      W PPV G +K+N DA++       G G
Subjt:  SLLDFELVI--VFWWSIWNLRNSWCWG--GLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-G

Query:  VVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
        +V+RD  GV+L +    +   +S  IAE   ++R I +A
Subjt:  VVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

XP_021747921.1 uncharacterized protein LOC110713786 [Chenopodium quinoa]1.3e-0832.86Show/hide
Query:  SMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG
        S  D L  +D  L I   W+IWN RN W + G   D      S E++   K+     LA+  +   S  +  +  W PP  G LKLN D  VR     + 
Subjt:  SMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG

Query:  GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
        GVV+RD  GV+++AA ++    W   I E  A++  ++ A
Subjt:  GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

XP_022135916.1 uncharacterized protein LOC111007754 [Momordica charantia]9.3e-1035.82Show/hide
Query:  DFELVIVFWWSIWNLRNSWC----WGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAGGVVIR
        D EL++V  WSIW  RN        GGL++      WS  YL  +K A    L     +V     +W GGW PP+   LK+N DA+V        GV++R
Subjt:  DFELVIVFWWSIWNLRNSWC----WGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAGGVVIR

Query:  DVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKI
        D  GV+ +AA + L    SVD AE +A+   +++
Subjt:  DVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKI

XP_030478315.1 uncharacterized protein LOC115695389 [Cannabis sativa]6.7e-0832.87Show/hide
Query:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSE
        ++ MKDR S   F L +   W IW+ RN   +     D   WI     L DF++ T+     P L+   VS      W PP  G   +N D S+      
Subjt:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSE

Query:  AG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
         G GVVIRD +G +++A    +P C S ++AE  A+   +K+A
Subjt:  AG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

TrEMBL top hitse value%identityAlignment
A0A2P5EYI2 Ribonuclease H-like domain containing protein9.4e-0832.14Show/hide
Query:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDD-RNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRG--GWMPPVGGELKLNFDASVRPA
        ++ +  RL    FEL+ V  WSIWN RN+  + G++ D  +   W+Q YL +F++      ++   +V + + ++ G  GW  PV GELKLN + SV   
Subjt:  MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDD-RNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRG--GWMPPVGGELKLNFDASVRPA

Query:  TSEAG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALI
        +S  G    IRD  GV+L         CW + +  G+ ++
Subjt:  TSEAG-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALI

A0A5C7HA98 CCHC-type domain-containing protein6.7e-0626.09Show/hide
Query:  DFELVIVFWWSIWNLRNSWCWG-GLVDDRNWWIWSQEYLCDFKIAT-----NCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-GV
        + EL+ V  W +W  RN        + + + + W+ +Y+ +F++A        GL RP  ++          W  P  G  K+N DA+++ A ++ G G 
Subjt:  DFELVIVFWWSIWNLRNSWCWG-GLVDDRNWWIWSQEYLCDFKIAT-----NCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-GV

Query:  VIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
        +IRD  G +++AA   +  C+   +AE  A++  +++A
Subjt:  VIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

A0A5C7IHD9 RNase H domain-containing protein3.2e-0835.25Show/hide
Query:  SLLDFELVI--VFWWSIWNLRNSWCWG--GLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-G
        SL D EL +  +FWW IW LRN+ C G  G+ DD +   W + +L  F  A      + CL  +S +      W PPV G +K+N DA++       G G
Subjt:  SLLDFELVI--VFWWSIWNLRNSWCWG--GLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAG-G

Query:  VVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
        +V+RD  GV+L +    +   +S  IAE   ++R I +A
Subjt:  VVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

A0A6J1C225 uncharacterized protein LOC1110077544.5e-1035.82Show/hide
Query:  DFELVIVFWWSIWNLRNSWC----WGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAGGVVIR
        D EL++V  WSIW  RN        GGL++      WS  YL  +K A    L     +V     +W GGW PP+   LK+N DA+V        GV++R
Subjt:  DFELVIVFWWSIWNLRNSWC----WGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAGGVVIR

Query:  DVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKI
        D  GV+ +AA + L    SVD AE +A+   +++
Subjt:  DVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKI

A0A6J1DBJ7 uncharacterized protein LOC1110189735.2e-0631.69Show/hide
Query:  DRLSLLDFELVIVFWWSIWNLRNS----WCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEA
        D +S      ++V  W+IWN RN     +  GG + D     WS+ YL  ++ A     +   +       IWR    PP    LK+N DA+ R  +  A
Subjt:  DRLSLLDFELVIVFWWSIWNLRNS----WCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEA

Query:  G-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA
        G GV+IRD  G++ + A  +L +   VD  EG+A+   I +A
Subjt:  G-GVVIRDVVGVMLMAACYVLPKCWSVDIAEGWALIRDIKIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCAATGAAGGATAGATTGAGTCTGCTAGATTTTGAACTTGTGATTGTCTTCTGGTGGTCCATTTGGAATTTGCGAAACTCTTGGTGCTGGGGAGGATTAGTTGA
TGATAGAAATTGGTGGATATGGTCTCAAGAATACCTTTGTGATTTTAAGATTGCTACCAATTGTGGTCTTGCTCGGCCTTGTTTGCAGGTGATTTCAGTTAGTACAATTT
GGCGTGGTGGTTGGATGCCGCCAGTGGGTGGTGAGTTGAAATTAAACTTTGATGCCTCTGTCAGGCCTGCTACGAGTGAAGCTGGGGGGGTTGTTATACGTGATGTCGTT
GGTGTAATGTTGATGGCTGCTTGCTACGTGTTGCCGAAATGTTGGAGTGTGGACATTGCAGAGGGATGGGCGCTGATTCGTGACATCAAGATTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCAATGAAGGATAGATTGAGTCTGCTAGATTTTGAACTTGTGATTGTCTTCTGGTGGTCCATTTGGAATTTGCGAAACTCTTGGTGCTGGGGAGGATTAGTTGA
TGATAGAAATTGGTGGATATGGTCTCAAGAATACCTTTGTGATTTTAAGATTGCTACCAATTGTGGTCTTGCTCGGCCTTGTTTGCAGGTGATTTCAGTTAGTACAATTT
GGCGTGGTGGTTGGATGCCGCCAGTGGGTGGTGAGTTGAAATTAAACTTTGATGCCTCTGTCAGGCCTGCTACGAGTGAAGCTGGGGGGGTTGTTATACGTGATGTCGTT
GGTGTAATGTTGATGGCTGCTTGCTACGTGTTGCCGAAATGTTGGAGTGTGGACATTGCAGAGGGATGGGCGCTGATTCGTGACATCAAGATTGCATAG
Protein sequenceShow/hide protein sequence
MWSMKDRLSLLDFELVIVFWWSIWNLRNSWCWGGLVDDRNWWIWSQEYLCDFKIATNCGLARPCLQVISVSTIWRGGWMPPVGGELKLNFDASVRPATSEAGGVVIRDVV
GVMLMAACYVLPKCWSVDIAEGWALIRDIKIA