CuGenDBv2

Gene ID	Lag0026334
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr10:34998824..34999138
RNA-Seq Expression	Lag0026334
Synteny	Lag0026334
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025406.1 reverse transcriptase [Cucumis melo var. makuwa]

3.6e-27

85.71

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG
        +DSINN LHIPEGPIT+ KAKK QEAFTLHVQKLAN+QRE ENFEPKFLYNVSSASQEE+ VKM REKLCSLED TG
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.1e-27

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGTG +K
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQK

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

4.2e-28

80.25

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGTG +K+
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK

TYK09768.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.6e-27

85.71

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG
        +DSINN LHIPEGPIT+ KAKK QEAFTLHVQKLAN+QRE ENFEPKFLYNVSSASQEE+ VKM REKLCSLED TG
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG

TYK11649.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.9e-28

81.48

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGTG +KK
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SHU3 Reverse transcriptase

1.7e-27

85.71

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG
        +DSINN LHIPEGPIT+ KAKK QEAFTLHVQKLAN+QRE ENFEPKFLYNVSSASQEE+ VKM REKLCSLED TG
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.0e-27

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGTG +K
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQK

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein

2.1e-28

80.25

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGTG +K+
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK

A0A5D3CEW5 Transposon Ty3-I Gag-Pol polyprotein

1.7e-27

85.71

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG
        +DSINN LHIPEGPIT+ KAKK QEAFTLHVQKLAN+QRE ENFEPKFLYNVSSASQEE+ VKM REKLCSLED TG
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTG

A0A5D3CN32 Transposon Ty3-I Gag-Pol polyprotein

9.2e-29

81.48

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Query:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK
        +DS+NN LH+PEGPIT+ KAKK QEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGTG +KK
Subjt:  MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTCAATCAATAATCCATTACATATACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGACACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATTC
ACAACGAGAGCCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACAGGAGGACAAAAAAAGTGTGCAGAATTTGTGAAGAGGTGGCTGTCCAACTTGCATCTCTTAGGATTTCGTGATGTCAAAGGATGTTAA

mRNA sequence

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Protein sequence

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MDSINNPLHIPEGPITRSKAKKTQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGGQKKCAEFVKRWLSNLHLLGFRDVKGC

Lag0026334 (gene) of Sponge gourd (AG-4) v1 genome