CuGenDBv2

Gene ID	Lag0026345
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	chr10:35248530..35248975
RNA-Seq Expression	Lag0026345
Synteny	Lag0026345
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009507 - chloroplast (cellular component) GO:0009521 - photosystem (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABQ14973.1 photosystem II CP47 chlorophyll apoprotein [Choristylis rhamnoides]

2.6e-23

77.78

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDLGAQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

QFQ33709.1 PSII 47KDa protein [Oreocharis mileensis]

5.7e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDLGAQVEFGAFQKLGD TT+R
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

QSX28176.1 photosystem II 47 kDa protein [Brachystegia bakeriana]

3.3e-23

77.78

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGDTTTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

QXI84975.1 photosystem II CP47 chlorophyll apoprotein [Gentiana phyllocalyx]

5.7e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDLGAQVEFGAFQKLGD TT+R
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

YP_009894652.1 PSII 47KDa protein [Chorispora tenella]

7.4e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQ+EFGAFQKLGDTTTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

TrEMBL top hits

e value

%identity

Alignment

A0A109RTC0 Photosystem II CP47 reaction center protein

3.6e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQ+EFGAFQKLGDTTTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A0A5P8FSR7 Photosystem II CP47 reaction center protein

2.8e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDLGAQVEFGAFQKLGD TT+R
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A0A6M8YUG8 Photosystem II CP47 reaction center protein

3.6e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQ+EFGAFQKLGDTTTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A0A6M8ZCF1 Photosystem II CP47 reaction center protein

3.6e-23

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQ+EFGAFQKLGDTTTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A6YAB3 Photosystem II CP47 reaction center protein

1.2e-23

77.78

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDLGAQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

SwissProt top hits

e value

%identity

Alignment

A4QJE1 Photosystem II CP47 reaction center protein

2.2e-25

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A4QJM5 Photosystem II CP47 reaction center protein

2.2e-25

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

A4QK44 Photosystem II CP47 reaction center protein

2.2e-25

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

P56777 Photosystem II CP47 reaction center protein

2.2e-25

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

Q7FNS4 Photosystem II CP47 reaction center protein

2.2e-25

76.39

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Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

1.5e-26

76.39

Show/hide

Query:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR
        RA      +  +SP+GWFTFG ASFA LFFF HIWHGARTLFRDVF GIDPDL AQVEFGAFQKLGD TTKR
Subjt:  RALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKR

Sequences

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CDS sequence

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ATGTTCCAAGGGTTGGGCTGTTTGACCATTAAAGTGGTACATGGGTTGGGTTCAGAACGTCATCGTGAGACAATTCAATCCATATCCGGTGTGGGTGTTAGAGCATTGAG
AGGACGGGGAAGTATAGTGTTGAACAGTCCAAAGGGTTGGTTTACTTTTGGGCTTGCTTCGTTTGCTTTTCTCTTCTTCTTCAGACACATTTGGCATGGTGCTAGAACCT
TATTCAGAGATGTCTTTGTTGGGATTGACCCAGATTTGGGCGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATACAACTACAAAAAGGGGTTGTTTGGGGCGC
TGA

mRNA sequence

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Protein sequence

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MFQGLGCLTIKVVHGLGSERHRETIQSISGVGVRALRGRGSIVLNSPKGWFTFGLASFAFLFFFRHIWHGARTLFRDVFVGIDPDLGAQVEFGAFQKLGDTTTKRGCLGR

Lag0026345 (gene) of Sponge gourd (AG-4) v1 genome