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Lag0026348 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026348
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReplication enhancer
Genome locationchr10:35256620..35259150
RNA-Seq ExpressionLag0026348
SyntenyLag0026348
Gene Ontology termsGO:0016032 - viral process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0019028 - viral capsid (cellular component)
GO:0005198 - structural molecule activity (molecular function)
InterPro domainsIPR000263 - Geminivirus AR1/BR1 coat protein
IPR000657 - Geminivirus AL3 coat protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AIS68773.1 replication enhancer protein [Bitter gourd yellow vein virus]9.0e-3265.69Show/hide
Query:  MEWDSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPG
        M  DSRTGE ITA + EN V+ WE  NPLYFK++ H +RPF TQHDII+++I+FNHNLR+ALG+HKCF+T +I T LRPPTGLFL+VFK Q +KYLDM G
Subjt:  MEWDSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPG

Query:  FV
         +
Subjt:  FV

AYN61544.1 AC3 [Tomato leaf curl New Delhi virus]1.2e-3166.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIW  PNPLYFK++ H +RPF T HDII+++I+FNHNLRRALG+HKCF+T +++T LRPPTG+FLRVF+ Q +KYLDM G V
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

CAL22871.1 replication enhancer protein [Tomato leaf curl New Delhi virus-[Multan:Luffa]]1.5e-3166.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIWE PNPLYFK++ H +RPF TQHDII+++I+FNHNLR+ALG+HKCF+T +I+T LRP  G+FLRVFK Q +KYLDM G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

QGR25313.1 replication enhancer protein [Tomato leaf curl New Delhi virus]2.0e-3166.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIWE PNPLYFK++ H +RPF T HDII+++I+FNHNLR+ALGIHKCF+T +I+T LRPPTG+FLRVF+ Q ++YL+M G V
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

YP_001911130.1 REn protein [Clerodendron golden mosaic virus]2.4e-3268.69Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA Q E+ VFIWE PNPLYFK++SH  RP    HDII ++I+FNHNLRRALG+HKCF++ RI+TRL PPTG FLRVFK +CMKYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

TrEMBL top hitse value%identityAlignment
A0A097BTS3 Replication enhancer4.4e-3265.69Show/hide
Query:  MEWDSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPG
        M  DSRTGE ITA + EN V+ WE  NPLYFK++ H +RPF TQHDII+++I+FNHNLR+ALG+HKCF+T +I T LRPPTGLFL+VFK Q +KYLDM G
Subjt:  MEWDSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPG

Query:  FV
         +
Subjt:  FV

A0A1Z5AZ67 Replication enhancer9.7e-3266.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIWE PNPLYFK++ H +RPF T HDII+++I+FNHNLR+ALGIHKCF+T +I+T LRPPTG+FLRVF+ Q ++YL+M G V
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

A0A3G2KQ67 Replication enhancer5.7e-3266.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIW  PNPLYFK++ H +RPF T HDII+++I+FNHNLRRALG+HKCF+T +++T LRPPTG+FLRVF+ Q +KYLDM G V
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

A5H156 Replication enhancer1.1e-3268.69Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA Q E+ VFIWE PNPLYFK++SH  RP    HDII ++I+FNHNLRRALG+HKCF++ RI+TRL PPTG FLRVFK +CMKYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

Q0VKH4 Replication enhancer7.4e-3266.67Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA + E+ VFIWE PNPLYFK++ H +RPF TQHDII+++I+FNHNLR+ALG+HKCF+T +I+T LRP  G+FLRVFK Q +KYLDM G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

SwissProt top hitse value%identityAlignment
P14969 Replication enhancer protein2.8e-2859.6Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        D RTGE ITA Q  N V+ WE  NPLYF +  H  RPF    DII +++RFNHNLR+ LGIHKCF+  RI+T LRP TGLFLRVF++Q +KYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

P27265 Replication enhancer protein4.7e-3161.62Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA Q EN VFIWE  NPLYFK+  H+ RPF   HDII ++IRFNHN+R+ +GIHKCF+  RI+T L+P TG FLRVF+++ +KYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

P36281 Replication enhancer protein3.9e-3062.63Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA Q  N  +IW  PNPLYFK++ H  RPF   HDII++ I+FNHNLRRAL IHKCF+   +FTRL+P T  FLRVFK Q MKYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

Q08590 Replication enhancer protein3.3e-2959.6Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE ITA Q  N VFIWE PNPLYFK++ H  RPF    DII ++IRFNHNLR+ALG+H+C++  +++T L+P T  FLRVFK Q +KYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

Q9DXE7 Replication enhancer protein6.7e-3060.61Show/hide
Query:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV
        DSRTGE +TA Q EN V+IW   NPLYFK+  H  RPF   HDII ++++FN+NLR+ALGIHKCF+T +I+TRL P T  FLRVFK+Q +KYLD  G +
Subjt:  DSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGGGATTCACGCACCGGGGAAAACATAACTGCATGTCAGTTGGAGAATGACGTTTTTATCTGGGAAACCCCAAATCCCTTGTATTTCAAGATGGTTTCACACAC
GACGCGACCGTTCCAGACACAGCACGACATAATCGAACTGGAGATTCGATTCAATCACAACCTTCGGAGGGCTTTGGGGATTCACAAATGTTTCATAACCTTGAGGATCT
TCACTCGCTTACGACCTCCGACAGGGCTTTTCTTGCGAGTCTTTAAATTTCAATGTATGAAATATTTAGACATGCCGGGGTTCGTTCCACAATTACCCGCCTATGTCTTG
GGCAGTGGGGACAGGCACAGACAGCAACAGTTGGACGTTGAAGATCTACATCCGTCGCACCATCCCGCGAATGCTGTACGCGGATGGAGACTATACGTTGATCAAAAGTC
GCCGGAGGGGAATATGTACGCCGGAAAACAACATATGATCGTCGTCGTCCACAATAGCGTTTACCCGTACGAAGAGCGTTATATCGCGATGTGGATAGGGACAGGCTTCG
CCTTGCCAGACTCCACGAAATCCACACTGCCAATATCACTGGCGTGTTCACGCTATCCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGATGTCGAATTACTACCA
GATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACGATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTG
TGTTGATCGGAAGTCTGTCGAGTTTCCGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCG
GAAACTATAGAAACGTATCAAAGAATGCCTTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATCGATATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGGGATTCACGCACCGGGGAAAACATAACTGCATGTCAGTTGGAGAATGACGTTTTTATCTGGGAAACCCCAAATCCCTTGTATTTCAAGATGGTTTCACACAC
GACGCGACCGTTCCAGACACAGCACGACATAATCGAACTGGAGATTCGATTCAATCACAACCTTCGGAGGGCTTTGGGGATTCACAAATGTTTCATAACCTTGAGGATCT
TCACTCGCTTACGACCTCCGACAGGGCTTTTCTTGCGAGTCTTTAAATTTCAATGTATGAAATATTTAGACATGCCGGGGTTCGTTCCACAATTACCCGCCTATGTCTTG
GGCAGTGGGGACAGGCACAGACAGCAACAGTTGGACGTTGAAGATCTACATCCGTCGCACCATCCCGCGAATGCTGTACGCGGATGGAGACTATACGTTGATCAAAAGTC
GCCGGAGGGGAATATGTACGCCGGAAAACAACATATGATCGTCGTCGTCCACAATAGCGTTTACCCGTACGAAGAGCGTTATATCGCGATGTGGATAGGGACAGGCTTCG
CCTTGCCAGACTCCACGAAATCCACACTGCCAATATCACTGGCGTGTTCACGCTATCCCTTCTTCGTGATAAGACCCCGTATCTGCCTACCGGATGTCGAATTACTACCA
GATTTCAATGAATTGTTTGGATCGTTAGAATCCAGTTACGGGAAATTAACAGTATTGCCCCGACACGATGGTCGTTACTGCATTGAACGTGTATGGCAGAAGAACATCTG
TGTTGATCGGAAGTCTGTCGAGTTTCCGGTAAAGATGGTTCGTCAATATTATAATCGACGCTATGCTATTTGGACGTCGTTCAAGGACACCGGAGATCTTCTAGGTGGCG
GAAACTATAGAAACGTATCAAAGAATGCCTTTTTCGTTTGCTATACATGGGTGTCGGAAACGACATCGATATGCAATTTGTATCTTGACACTGAAATGGTCTTCTATGGG
TGA
Protein sequenceShow/hide protein sequence
MEWDSRTGENITACQLENDVFIWETPNPLYFKMVSHTTRPFQTQHDIIELEIRFNHNLRRALGIHKCFITLRIFTRLRPPTGLFLRVFKFQCMKYLDMPGFVPQLPAYVL
GSGDRHRQQQLDVEDLHPSHHPANAVRGWRLYVDQKSPEGNMYAGKQHMIVVVHNSVYPYEERYIAMWIGTGFALPDSTKSTLPISLACSRYPFFVIRPRICLPDVELLP
DFNELFGSLESSYGKLTVLPRHDGRYCIERVWQKNICVDRKSVEFPVKMVRQYYNRRYAIWTSFKDTGDLLGGGNYRNVSKNAFFVCYTWVSETTSICNLYLDTEMVFYG