; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026378 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026378
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:35737400..35738293
RNA-Seq ExpressionLag0026378
SyntenyLag0026378
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL93545.1 hypothetical protein [Colocasia esculenta]1.7e-3334.83Show/hide
Query:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ
        ++A V  K  +PT   YDG  DP  H++ ++S M FH  SDA +C AF  TL  +T  WFE L   SIS F+ L ++F   F+G + Q +   +LL V+Q
Subjt:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ

Query:  QPGKS-------------------------------------------QPRTYAEFVSQAQKYMNAEELLKSKKS--GREHKRHSSSDHDSKKDKRQRTN
        + G++                                           QP T +E +S AQ++   EE L + ++  G +  +   SD+ S +D++    
Subjt:  QPGKS-------------------------------------------QPRTYAEFVSQAQKYMNAEELLKSKKS--GREHKRHSSSDHDSKKDKRQRTN

Query:  ERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF
           +GR N GD  + F  YTP +V  EQIL EIRN   +  P++++S+P  RD+++YC FH DHGH T  C QLKDEIE L++  YL  F
Subjt:  ERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF

MQM08867.1 hypothetical protein [Colocasia esculenta]1.4e-3538.46Show/hide
Query:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ
        ++A V  K  +PT   YDG  DP  H++ ++S M FH  SDA +C AF  TL  +   WFE L   SIS F+ L ++F   F+G + Q +   +LL V+Q
Subjt:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ

Query:  QPGKS------------QPRTYAEFVSQAQKYMNAEELLKSKKS--GREHKRHSSSDHDSKKD-KRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQIL
        + G++            QP T AE +S AQ++   EE L + ++  G +  +   SD+ S +D K+ R N+    RP        F  YTP +V  EQIL
Subjt:  QPGKS------------QPRTYAEFVSQAQKYMNAEELLKSKKS--GREHKRHSSSDHDSKKD-KRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQIL

Query:  MEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF
         EIRN + +  P++++S+P  RD+++YC FH +HGH T  C QLKDEIE L++  YL  F
Subjt:  MEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.9e-4839.86Show/hide
Query:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ
        M+ +VP KFK+PT K +D   DPV HL+AY+ WMD + VS+A+RC  F  TL GS   WF +LK  SIS FK LARAF+ QF+G + + +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ

Query:  QP-------------------------------------------GKSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQRTNER
        +                                            GK  P T++E +S+AQ+YM+A E   SK+      + +    +   DK Q +   
Subjt:  QP-------------------------------------------GKSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQRTNER

Query:  GRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ
         R R +Q D  +KF+KYTPT+VP EQ+LMEI++  LL  P ++K++   R K +YCLFH DHGH+T++C  LK+E+E L+R  YLKE+  + +A Q
Subjt:  GRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]3.6e-3632.67Show/hide
Query:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ
        M A+ P +F +P  + YDG++DP +HL  Y++ M+    S AI C AF  TL G+   WF RL+  SIS F DL+R F + F   +++ KP   LLTVKQ
Subjt:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ

Query:  QPG-------------------------------------------KSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQ-----
        Q G                                           K  P +Y+E +++A+KY NAEE  K++   +          D ++++R      
Subjt:  QPG-------------------------------------------KSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQ-----

Query:  -------RTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF
               R  ER   R  +     +F  +T  + P EQILM++RN  L   P  +K+NP  R+ ++YC FH DHGH T  C +LK++IE L+R   L+E+
Subjt:  -------RTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEF

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]4.3e-3433.45Show/hide
Query:  VPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ----------
        +P  KLY GK+D  +HL  Y+SWM+    S A  C AF  TL  +   W+ +L+  SIS F  L++  + QF+G ++Q+ P    L VKQ          
Subjt:  VPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ----------

Query:  --------------------------QPG-------KSQPRTYAEFVSQAQKYMNAEELLKSKKSGRE------HKRHSSSDHDSKKDKRQRTNERGRGR
                                  QPG       K+  RT+ E +S+AQKY N +EL  +K+           KR    +    K+K  R  ++G   
Subjt:  --------------------------QPG-------KSQPRTYAEFVSQAQKYMNAEELLKSKKSGRE------HKRHSSSDHDSKKDKRQRTNERGRGR

Query:  PNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK
                +F +YTP ++P EQ+LM+IRN +LL  P+ +K  P+ RD+S+YC +H DH H+  +C  LK+EI+ L++  YLKEF  K
Subjt:  PNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK

TrEMBL top hitse value%identityAlignment
A0A2N9EKU0 Ribonuclease H3.8e-3636.05Show/hide
Query:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-
        +P KF++P+ +++DG KDP+ HL ++K+ M    V D I C AF  TL G    WF++L   S+  F  L+R F   F+G +   +P  +LL VKQ+ G 
Subjt:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-

Query:  -------KSQPRTYAEFVSQAQKYMNAEELL------KSKKSGREHKRHSSSDHDSKKDKRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRN
               +  P T  E + +AQ+YMN EE L        KK   +H    +  H+++   ++  N R   R  +G + ++F ++TP + P + I M+IRN
Subjt:  -------KSQPRTYAEFVSQAQKYMNAEELL------KSKKSGREHKRHSSSDHDSKKDKRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRN

Query:  TNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK
           L  P KL ++PD R + +YC FH DHGH+T NC  LK +IE L++   L+ F  K
Subjt:  TNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK

A0A2N9G8B9 Ribonuclease H3.8e-3636.05Show/hide
Query:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-
        +P KF++P+ +++DG KDP+ HL ++K+ M    V D I C AF  TL G    WF++L   S+  F  L+R F   F+G +   +P  +LL VKQ+ G 
Subjt:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-

Query:  -------KSQPRTYAEFVSQAQKYMNAEELL------KSKKSGREHKRHSSSDHDSKKDKRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRN
               +  P T  E + +AQ+YMN EE L        KK   +H    +  H+++   ++  N R   R  +G + ++F ++TP + P + I M+IRN
Subjt:  -------KSQPRTYAEFVSQAQKYMNAEELL------KSKKSGREHKRHSSSDHDSKKDKRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRN

Query:  TNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK
           L  P KL ++PD R + +YC FH DHGH+T NC  LK +IE L++   L+ F  K
Subjt:  TNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTK

A0A6J1DWY0 uncharacterized protein LOC1110252933.3e-4839.86Show/hide
Query:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ
        M+ +VP KFK+PT K +D   DPV HL+AY+ WMD + VS+A+RC  F  TL GS   WF +LK  SIS FK LARAF+ QF+G + + +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQ

Query:  QP-------------------------------------------GKSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQRTNER
        +                                            GK  P T++E +S+AQ+YM+A E   SK+      + +    +   DK Q +   
Subjt:  QP-------------------------------------------GKSQPRTYAEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQRTNER

Query:  GRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ
         R R +Q D  +KF+KYTPT+VP EQ+LMEI++  LL  P ++K++   R K +YCLFH DHGH+T++C  LK+E+E L+R  YLKE+  + +A Q
Subjt:  GRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ

A0A7N2N013 Ribonuclease H6.1e-3433.56Show/hide
Query:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-
        +P KF++P+   YDG KDP+ HL  +K+ M    V+DAI C AF  TL G+   WF R+   SIS FK+L+  F   F+G    +K    L+ +KQ+   
Subjt:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-

Query:  ------------------------------------------KSQPRTYAEFVSQAQKYMNAEELLKSKK---SGREHKRHSSSDHDSKKDKRQRTNERG
                                                  K+ P+T +E + +A KYMNAE+ L S++     R+    S  D   KK +     E  
Subjt:  ------------------------------------------KSQPRTYAEFVSQAQKYMNAEELLKSKK---SGREHKRHSSSDHDSKKDKRQRTNERG

Query:  RGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ
        R +P  G    +F  +TP + P +Q+LM+I++   L  P KLKS+P  R + +YC FH DHGH T +C  LK +IE L+R   L++F  K   DQ
Subjt:  RGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQ

A0A7N2N9G0 Reverse transcriptase1.2e-3434.35Show/hide
Query:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-
        +P KF++P    YDG KDP+ HL  +K+ M    V+DAI C AF  TL G+   WF RL   SI  FK+L+  F A F+G    +K    L+++KQ+   
Subjt:  VPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPG-

Query:  ------------------------------------------KSQPRTYAEFVSQAQKYMNAEELL---KSKKSGREHKRHSSSDHDSKKDKRQRTNERG
                                                  K+ P+T +E + +A KYMNAE+ L   + K   RE +  +  D   KK +     E  
Subjt:  ------------------------------------------KSQPRTYAEFVSQAQKYMNAEELL---KSKKSGREHKRHSSSDHDSKKDKRQRTNERG

Query:  RGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEAD
        R RP  G    +F  +TP + P +Q+LM+I++   L  P KLKS+P+ R + +YC FH DHGH T +C  LK +IE L+R   L+ F +K  AD
Subjt:  RGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHGHSTRNCIQLKDEIEVLMRNRYLKEFNTKVEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTGAGGTGCCCCAGAAGTTCAAAGTACCTACATTCAAGCTGTATGATGGCAAGAAAGACCCTGTCCAACATCTAAATGCCTACAAAAGCTGGATGGACTTCCA
CGACGTCTCAGATGCAATCAGGTGTTGTGCATTCTTTTTCACTCTAACAGGATCAACCATGCATTGGTTTGAGAGGCTGAAAATGAGATCCATCAGCTGTTTCAAGGATT
TAGCCCGAGCATTCCTTGCACAGTTCATGGGAGTTAAAGAACAACGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCTGGTAAGAGCCAACCTCGAACCTAT
GCAGAGTTCGTCTCCCAGGCACAGAAATACATGAACGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGGACGAGAACACAAAAGACATTCTTCATCTGACCATGATAGTAA
AAAGGACAAGAGGCAGCGAACAAACGAAAGAGGCCGAGGCCGACCAAACCAAGGAGACTACTTAAAGAAGTTTAAAAAGTACACCCCTACTTCAGTCCCACATGAGCAGA
TCTTGATGGAGATACGAAATACAAACCTACTTAATGCGCCCAGGAAACTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCTAGATCATGGA
CATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGTGCTGATGCGGAACAGATACCTGAAGGAGTTCAACACAAAGGTCGAGGCCGACCAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTGAGGTGCCCCAGAAGTTCAAAGTACCTACATTCAAGCTGTATGATGGCAAGAAAGACCCTGTCCAACATCTAAATGCCTACAAAAGCTGGATGGACTTCCA
CGACGTCTCAGATGCAATCAGGTGTTGTGCATTCTTTTTCACTCTAACAGGATCAACCATGCATTGGTTTGAGAGGCTGAAAATGAGATCCATCAGCTGTTTCAAGGATT
TAGCCCGAGCATTCCTTGCACAGTTCATGGGAGTTAAAGAACAACGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCTGGTAAGAGCCAACCTCGAACCTAT
GCAGAGTTCGTCTCCCAGGCACAGAAATACATGAACGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGGACGAGAACACAAAAGACATTCTTCATCTGACCATGATAGTAA
AAAGGACAAGAGGCAGCGAACAAACGAAAGAGGCCGAGGCCGACCAAACCAAGGAGACTACTTAAAGAAGTTTAAAAAGTACACCCCTACTTCAGTCCCACATGAGCAGA
TCTTGATGGAGATACGAAATACAAACCTACTTAATGCGCCCAGGAAACTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCTAGATCATGGA
CATTCAACTAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGTGCTGATGCGGAACAGATACCTGAAGGAGTTCAACACAAAGGTCGAGGCCGACCAGAGATGA
Protein sequenceShow/hide protein sequence
MKAEVPQKFKVPTFKLYDGKKDPVQHLNAYKSWMDFHDVSDAIRCCAFFFTLTGSTMHWFERLKMRSISCFKDLARAFLAQFMGVKEQRKPHINLLTVKQQPGKSQPRTY
AEFVSQAQKYMNAEELLKSKKSGREHKRHSSSDHDSKKDKRQRTNERGRGRPNQGDYLKKFKKYTPTSVPHEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHLDHG
HSTRNCIQLKDEIEVLMRNRYLKEFNTKVEADQR