; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026423 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026423
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:36589029..36591355
RNA-Seq ExpressionLag0026423
SyntenyLag0026423
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2761.98Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  +EENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ K F E N D+K+HS + SRMKRKFSV INTE SL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKSF
        II TNL NEG ++  D++KSF
Subjt:  IILTNLANEGSDQDHDKDKSF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-2762.5Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG ++  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]6.8e-2762.71Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+H+ + SRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNLANEGSDQDHDKDKS
         TN  NEG ++  D++KS
Subjt:  LTNLANEGSDQDHDKDKS

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-2761.67Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC M T  + SAF+RLS+STS K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG +Q  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]5.2e-2761.67Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK S+ INT+GSL VKP L
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG ++  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein6.6e-2861.98Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  +EENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ K F E N D+K+HS + SRMKRKFSV INTE SL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKSF
        II TNL NEG ++  D++KSF
Subjt:  IILTNLANEGSDQDHDKDKSF

A0A5A7TQ06 Retrotransposon gag protein1.1e-2762.5Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG ++  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

A0A5A7URU7 Gag protease polyprotein3.3e-2762.71Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+H+ + SRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNLANEGSDQDHDKDKS
         TN  NEG ++  D++KS
Subjt:  LTNLANEGSDQDHDKDKS

A0A5A7VRG7 Retrotransposon gag protein3.3e-2761.67Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC M T  + SAF+RLS+STS K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK SV INTEGSL VKP  
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG +Q  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

A0A5D3D5Q0 Gag protease polyprotein2.5e-2761.67Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK S+ INT+GSL VKP L
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNLANEGSDQDHDKDKS
        II TN  NEG ++  D++KS
Subjt:  IILTNLANEGSDQDHDKDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATA
GTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGA
TCTGATCAAGACCATGACAAAGATAAGAGCTTTCAAATTTGTACGACCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCT
CTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTACTTCTCTCCAAGGTCGAAGAAG
AAAGGAAGAGAAAGAAGAAGAAAGGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAAAAATTCCGGCGACCGCCGCCGCCGCTGCCGTTCACCGGCAGCCGG
CGGCGGCTGGCCACCGGAGCTGAAGAAGATGGAAGGGGGAAGGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATA
GTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCTTGCAAATGAAGGA
TCTGATCAAGACCATGACAAAGATAAGAGCTTTCAAATTTGTACGACCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCT
CTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTACTTCTCTCCAAGGTCGAAGAAG
AAAGGAAGAGAAAGAAGAAGAAAGGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAAAAATTCCGGCGACCGCCGCCGCCGCTGCCGTTCACCGGCAGCCGG
CGGCGGCTGGCCACCGGAGCTGAAGAAGATGGAAGGGGGAAGGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATAG
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKVKPNLIILTNLANEG
SDQDHDKDKSFQICTTATLFLLQVRRILCGALLHCSLFSQVRWFSRSFAGVPSPQVRRFSRASLQLLLSKVEEERKRKKKKGRREEEKKKKEGKKKFRRPPPPLPFTGSR
RRLATGAEEDGRGKEEDGRGKEEDGREKEGGEERR