; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026428 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026428
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 2
Genome locationchr10:36659598..36663268
RNA-Seq ExpressionLag0026428
SyntenyLag0026428
Gene Ontology termsGO:0002143 - tRNA wobble position uridine thiolation (biological process)
GO:0010311 - lateral root formation (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016783 - sulfurtransferase activity (molecular function)
InterPro domainsIPR014729 - Rossmann-like alpha/beta/alpha sandwich fold
IPR019407 - Cytoplasmic tRNA 2-thiolation protein 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136614.1 cytoplasmic tRNA 2-thiolation protein 2 [Cucumis sativus]2.6e-4571.63Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQDSPP+++PDT AA+E+RRV T DD+SNT+LC KCKSKERMS+SGVGDDGRFCSDCFRSNLFAKFRQAV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSGVLVPVVKPWTRANAQ---QSQLNANNSSSSS
        SDKVLVAFSG       P +R   Q   + Q+ A+N+  +S
Subjt:  SDKVLVAFSGVLVPVVKPWTRANAQ---QSQLNANNSSSSS

XP_008443191.1 PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Cucumis melo]6.1e-4283.64Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQDSPP+++P TAA  ESR   TNDD+SNT+LC KCKSKERMS+SGVGDDGR CSDCFRSNLFAKFRQAV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

XP_022152059.1 cytoplasmic tRNA 2-thiolation protein 2 [Momordica charantia]1.5e-4082.73Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSS CQSNCYRNQDDEET+EQ SPP  K + AAA+ES  VDTN D  NTHLC KCKS ERMSSSGVGDDGRFCS CFRSNLFAKFR AV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

XP_022939604.1 cytoplasmic tRNA 2-thiolation protein 2 [Cucurbita moschata]4.1e-3880.91Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQDDE TVEQDS  T K D  AA       TN DS +THLC KCK+KERMSSS  GDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

XP_038905927.1 cytoplasmic tRNA 2-thiolation protein 2 [Benincasa hispida]4.5e-4586.36Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQ SPP+++ DTAAAVES +VDTNDDSS+THLC KCKSKER+SSSGVGDDGR CSDCFRSNLF KFRQAVNSNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

TrEMBL top hitse value%identityAlignment
A0A0A0LC57 Cytoplasmic tRNA 2-thiolation protein 21.3e-4571.63Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQDSPP+++PDT AA+E+RRV T DD+SNT+LC KCKSKERMS+SGVGDDGRFCSDCFRSNLFAKFRQAV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSGVLVPVVKPWTRANAQ---QSQLNANNSSSSS
        SDKVLVAFSG       P +R   Q   + Q+ A+N+  +S
Subjt:  SDKVLVAFSGVLVPVVKPWTRANAQ---QSQLNANNSSSSS

A0A1S3B7H9 Cytoplasmic tRNA 2-thiolation protein 22.9e-4283.64Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQDSPP+++P TAA  ESR   TNDD+SNT+LC KCKSKERMS+SGVGDDGR CSDCFRSNLFAKFRQAV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

A0A5D3DPK4 Cytoplasmic tRNA 2-thiolation protein 22.9e-4283.64Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQ DE T+EQDSPP+++P TAA  ESR   TNDD+SNT+LC KCKSKERMS+SGVGDDGR CSDCFRSNLFAKFRQAV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

A0A6J1DEW9 Cytoplasmic tRNA 2-thiolation protein 27.3e-4182.73Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSS CQSNCYRNQDDEET+EQ SPP  K + AAA+ES  VDTN D  NTHLC KCKS ERMSSSGVGDDGRFCS CFRSNLFAKFR AV SNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

A0A6J1FHP7 Cytoplasmic tRNA 2-thiolation protein 22.0e-3880.91Show/hide
Query:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
        MACNSSACQSNCYRNQDDE TVEQDS  T K D  AA       TN DS +THLC KCK+KERMSSS  GDDGRFCSDCFRSNLFAKFRQAVNSNAMISP
Subjt:  MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISP

Query:  SDKVLVAFSG
        SDKVLVAFSG
Subjt:  SDKVLVAFSG

SwissProt top hitse value%identityAlignment
A2ZM73 Cytoplasmic tRNA 2-thiolation protein 29.5e-0637.65Show/hide
Query:  PPTTKPDTAAAVESRRVDTNDDSSNTHLCLKC-KSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG
        P  +   +AAAVE       +      L  +C K     ++  V      C +CFR+NL  KF+ AV SNAM+ P+D VL+AFSG
Subjt:  PPTTKPDTAAAVESRRVDTNDDSSNTHLCLKC-KSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG

O65628 Cytoplasmic tRNA 2-thiolation protein 22.0e-1644.64Show/hide
Query:  MACNSSACQSNCY-RNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMS-SSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMI
        MACNSS C+S CY R +D+   +  D+                   +   ++  +C+KCK    M+   G  DDGRFC+DCFR+N+F KFR AV S+AMI
Subjt:  MACNSSACQSNCY-RNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMS-SSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMI

Query:  SPSDKVLVAFSG
        +PSD VLVAFSG
Subjt:  SPSDKVLVAFSG

Q28ES8 Cytoplasmic tRNA 2-thiolation protein 28.1e-0533.33Show/hide
Query:  DTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSGVLVPVVKPWTRANAQQSQLNANNSSSSSL
        DT    S    C+KCK    +     GD   FC  CF+     KFR  +  N +I P +KVL+AFSG       P + A  QQ Q   +  +   L
Subjt:  DTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSGVLVPVVKPWTRANAQQSQLNANNSSSSSL

Q2QMW0 Cytoplasmic tRNA 2-thiolation protein 29.5e-0637.65Show/hide
Query:  PPTTKPDTAAAVESRRVDTNDDSSNTHLCLKC-KSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG
        P  +   +AAAVE       +      L  +C K     ++  V      C +CFR+NL  KF+ AV SNAM+ P+D VL+AFSG
Subjt:  PPTTKPDTAAAVESRRVDTNDDSSNTHLCLKC-KSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG

Q2VPK5 Cytoplasmic tRNA 2-thiolation protein 21.8e-0430.3Show/hide
Query:  CYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG
        C   +D  E   ++ PP  +P                 S    C+KCK  + +     GD   FC DCF++    KFR  +  N +I P +KVL+A+SG
Subjt:  CYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG

Arabidopsis top hitse value%identityAlignment
AT4G35910.1 Adenine nucleotide alpha hydrolases-like superfamily protein1.5e-1744.64Show/hide
Query:  MACNSSACQSNCY-RNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMS-SSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMI
        MACNSS C+S CY R +D+   +  D+                   +   ++  +C+KCK    M+   G  DDGRFC+DCFR+N+F KFR AV S+AMI
Subjt:  MACNSSACQSNCY-RNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMS-SSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMI

Query:  SPSDKVLVAFSG
        +PSD VLVAFSG
Subjt:  SPSDKVLVAFSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTGTAATTCCTCAGCCTGCCAGTCGAACTGCTACAGAAATCAAGATGACGAAGAAACAGTCGAACAAGATTCACCTCCAACAACCAAGCCCGATACAGCAGCCGC
CGTGGAGTCTCGTCGAGTTGATACGAACGACGACAGTAGTAATACGCATCTCTGCTTGAAGTGCAAGTCCAAGGAGCGTATGTCTAGCTCTGGAGTAGGAGACGATGGCC
GCTTTTGCAGCGATTGCTTTCGTAGCAACTTGTTTGCTAAGTTCCGGCAGGCTGTAAACTCGAACGCCATGATCTCTCCTTCGGATAAAGTTCTTGTTGCCTTCTCTGGG
GTCCTTGTTCCAGTGGTTAAGCCATGGACTAGAGCCAATGCCCAGCAAAGCCAACTAAATGCAAACAATTCCTCATCTTCTTCCTTAGTTTTGGGTGATCAATTCAAGCA
CTTAGCCGAGCTACTATTTCAAGTAGGTTTTATTGACCTTTCTACTAGGGTATCCCCAGAGGCGCCTAAGGCGCGCGCCTCGGGGGCTTCGAGGAAGGCGCGCGCCTTGG
CCGCTCCTTCCTCACTGCGCCTCGCTTCTTCGAAGCGTGGCGCTAACGTTGCGCCTTGCGCGGCTGGGCGTGCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTGTAATTCCTCAGCCTGCCAGTCGAACTGCTACAGAAATCAAGATGACGAAGAAACAGTCGAACAAGATTCACCTCCAACAACCAAGCCCGATACAGCAGCCGC
CGTGGAGTCTCGTCGAGTTGATACGAACGACGACAGTAGTAATACGCATCTCTGCTTGAAGTGCAAGTCCAAGGAGCGTATGTCTAGCTCTGGAGTAGGAGACGATGGCC
GCTTTTGCAGCGATTGCTTTCGTAGCAACTTGTTTGCTAAGTTCCGGCAGGCTGTAAACTCGAACGCCATGATCTCTCCTTCGGATAAAGTTCTTGTTGCCTTCTCTGGG
GTCCTTGTTCCAGTGGTTAAGCCATGGACTAGAGCCAATGCCCAGCAAAGCCAACTAAATGCAAACAATTCCTCATCTTCTTCCTTAGTTTTGGGTGATCAATTCAAGCA
CTTAGCCGAGCTACTATTTCAAGTAGGTTTTATTGACCTTTCTACTAGGGTATCCCCAGAGGCGCCTAAGGCGCGCGCCTCGGGGGCTTCGAGGAAGGCGCGCGCCTTGG
CCGCTCCTTCCTCACTGCGCCTCGCTTCTTCGAAGCGTGGCGCTAACGTTGCGCCTTGCGCGGCTGGGCGTGCCTTTTAA
Protein sequenceShow/hide protein sequence
MACNSSACQSNCYRNQDDEETVEQDSPPTTKPDTAAAVESRRVDTNDDSSNTHLCLKCKSKERMSSSGVGDDGRFCSDCFRSNLFAKFRQAVNSNAMISPSDKVLVAFSG
VLVPVVKPWTRANAQQSQLNANNSSSSSLVLGDQFKHLAELLFQVGFIDLSTRVSPEAPKARASGASRKARALAAPSSLRLASSKRGANVAPCAAGRAF