CuGenDBv2

Gene ID	Lag0026445
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Genome location	chr10:36873023..36874805
RNA-Seq Expression	Lag0026445
Synteny	Lag0026445
Gene Ontology terms	GO:0031124 - mRNA 3'-end processing (biological process) GO:0016591 - RNA polymerase II, holoenzyme (cellular component) GO:0000993 - RNA polymerase II complex binding (molecular function)
InterPro domains	IPR006569 - CID domain IPR008942 - ENTH/VHS

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7027736.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.5e-43

95.7

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Query:  MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        MNLF FDIELALSRWCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDESGKKAVARL
Subjt:  MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

XP_004136608.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus]

6.7e-39

97.59

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

XP_008443180.1 PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo]

6.7e-39

97.59

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

XP_022152017.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia]

6.7e-39

97.59

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGD+SGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

XP_038904543.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida]

4.4e-38

96.39

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LSRWCISHRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDE GKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBI8 CID domain-containing protein

9.8e-44

96.77

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Query:  MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        M LFIFDI+LALS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
Subjt:  MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

A0A1S3B7H0 regulation of nuclear pre-mRNA domain-containing protein 1B-like

3.3e-39

97.59

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

A0A6J1DF20 regulation of nuclear pre-mRNA domain-containing protein 1B-like

3.3e-39

97.59

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGD+SGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

A0A6J1FGC3 regulation of nuclear pre-mRNA domain-containing protein 1B-like

8.0e-38

95.18

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LSRWCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDESGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

A0A6J1I2G4 regulation of nuclear pre-mRNA domain-containing protein 1B-like

3.6e-38

96.39

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Query:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDESGKKAVARL
Subjt:  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

SwissProt top hits

e value

%identity

Alignment

Q0P5J9 Regulation of nuclear pre-mRNA domain-containing protein 1A

1.6e-14

38.1

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI
        LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DES KK + R   + E+  +     LE++
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI

Query:  KRLVF
        K+ ++
Subjt:  KRLVF

Q5R8Y3 Regulation of nuclear pre-mRNA domain-containing protein 1A

1.6e-14

38.1

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI
        LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DES KK + R   + E+  +     LE++
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI

Query:  KRLVF
        K+ ++
Subjt:  KRLVF

Q96P16 Regulation of nuclear pre-mRNA domain-containing protein 1A

1.6e-14

38.1

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI
        LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+  A K+V    DES KK + R   + E+  +     LE++
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEI

Query:  KRLVF
        K+ ++
Subjt:  KRLVF

Q9CSU0 Regulation of nuclear pre-mRNA domain-containing protein 1B

7.0e-15

39.09

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRL
        LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V    DE  KK + RL    +  + +  E I++L
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRL

Query:  VFQFDGNMSP
            + + SP
Subjt:  VFQFDGNMSP

Q9NQG5 Regulation of nuclear pre-mRNA domain-containing protein 1B

7.0e-15

39.09

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRL
        LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V    DE  KK + RL    +  + +  E I++L
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRL

Query:  VFQFDGNMSP
            + + SP
Subjt:  VFQFDGNMSP

Arabidopsis top hits

e value

%identity

Alignment

AT3G26990.1 ENTH/VHS family protein

5.3e-26

62.2

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        LS WCI H  KAK +VETW + F+ + +EQR+++LYLANDILQNSRRKGSEFV EFWKVLP AL+ + ++GD+ G+K+  RL
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

AT5G10060.1 ENTH/VHS family protein

1.7e-24

60.98

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        LS WCI +R KA+ IV TW+K F+S++ +Q+V  LYLANDILQNS+R+G+EFV EFW VLP ALK +   GD++GK AVAR+
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

AT5G65180.1 ENTH/VHS family protein

1.3e-24

62.2

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Query:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL
        LS+WCI HR +A+ +V TW+K F+S+Q  Q+V  LYLANDILQNS+R+G+EFV EFWKVLPGALK +   GD+ GK  V+RL
Subjt:  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARL

Sequences

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CDS sequence

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ATGAATCTGTTTATCTTTGATATCGAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCTAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATC
TCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTG
CTCTCAAGTACGTTTATGATCATGGGGATGAAAGTGGAAAGAAAGCGGTTGCCAGGCTTAGAGAAAAGGAAGAGCTAGAAGCCCCATTCACTTTGGAAGAGATTAAAAGA
TTGGTGTTTCAATTTGACGGGAATATGTCCCCTGGTTCGGATGGATTCACAATGTCTTTCTCTTAG

mRNA sequence

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Protein sequence

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MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKR
LVFQFDGNMSPGSDGFTMSFS

Lag0026445 (gene) of Sponge gourd (AG-4) v1 genome