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Lag0026460 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026460
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr10:37257656..37265521
RNA-Seq ExpressionLag0026460
SyntenyLag0026460
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038428.1 Chromo domain-containing protein [Cucumis melo var. makuwa]2.5e-2487.32Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQPIELKEDLSY+EEAVQILDRKEQVLRNK+I LVK+LW HH +EE TWESEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

KAA0054352.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-2485.92Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQP ELKEDLSY+EEAVQILDRKEQVLRNK I LVK+LWRHH +EE TWESEDQ+RR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

KAA0067723.1 reverse transcriptase [Cucumis melo var. makuwa]5.5e-2484.51Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHV QVQPIELKEDLSY+EEAVQILDRKEQVLRNK I L+++LWRHH +EE TWESEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-3239.29Show/hide
Query:  DPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRRRKAHAKPAIAESEFNLSTSGFVFGLSYTEGTKRAQD
        DPSHVLQVQP ELKEDLSY+EEAVQILDRK QVLRNK I LVK+LWRHH +EE TWE                 E+  +L T                  
Subjt:  DPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRRRKAHAKPAIAESEFNLSTSGFVFGLSYTEGTKRAQD

Query:  FRAKQEDLWFSPVFRALWGVQVISEALFGQEEISDVDFSYRKRTGQISIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAK
                                          ++D +       +SIDYMTEILS RL GTVCTQ                 VEIEL VPDTLPTSA+
Subjt:  FRAKQEDLWFSPVFRALWGVQVISEALFGQEEISDVDFSYRKRTGQISIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAK

Query:  SFRTSSR--------------------------------STGIVRGDDVCWLHAVFRTKLAGGSGGVDYGLLSMRECSLI
         F ++S                                 S GIVRGDDVCWLHAVFR K AGG  G   G + +++  +I
Subjt:  SFRTSSR--------------------------------STGIVRGDDVCWLHAVFRTKLAGGSGGVDYGLLSMRECSLI

TYK11723.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-2485.92Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQPIELKEDLSY+EEAVQI+DRKEQVLRNK I LVK+LWRHH +EE TW+SEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

TrEMBL top hitse value%identityAlignment
A0A5A7T6E5 Chromo domain-containing protein1.2e-2487.32Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQPIELKEDLSY+EEAVQILDRKEQVLRNK+I LVK+LW HH +EE TWESEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

A0A5A7UF07 Reverse transcriptase2.1e-2485.92Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQP ELKEDLSY+EEAVQILDRKEQVLRNK I LVK+LWRHH +EE TWESEDQ+RR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

A0A5A7VI06 Reverse transcriptase2.7e-2484.51Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHV QVQPIELKEDLSY+EEAVQILDRKEQVLRNK I L+++LWRHH +EE TWESEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.6e-3239.29Show/hide
Query:  DPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRRRKAHAKPAIAESEFNLSTSGFVFGLSYTEGTKRAQD
        DPSHVLQVQP ELKEDLSY+EEAVQILDRK QVLRNK I LVK+LWRHH +EE TWE                 E+  +L T                  
Subjt:  DPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRRRKAHAKPAIAESEFNLSTSGFVFGLSYTEGTKRAQD

Query:  FRAKQEDLWFSPVFRALWGVQVISEALFGQEEISDVDFSYRKRTGQISIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAK
                                          ++D +       +SIDYMTEILS RL GTVCTQ                 VEIEL VPDTLPTSA+
Subjt:  FRAKQEDLWFSPVFRALWGVQVISEALFGQEEISDVDFSYRKRTGQISIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAK

Query:  SFRTSSR--------------------------------STGIVRGDDVCWLHAVFRTKLAGGSGGVDYGLLSMRECSLI
         F ++S                                 S GIVRGDDVCWLHAVFR K AGG  G   G + +++  +I
Subjt:  SFRTSSR--------------------------------STGIVRGDDVCWLHAVFRTKLAGGSGGVDYGLLSMRECSLI

A0A5D3CIH8 Reverse transcriptase2.1e-2485.92Show/hide
Query:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR
        MLRKYI DPSHVLQVQPIELKEDLSY+EEAVQI+DRKEQVLRNK I LVK+LWRHH +EE TW+SEDQMRR
Subjt:  MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGAAATATATTCTAGATCCATCCCATGTGTTGCAAGTGCAACCGATTGAGCTGAAGGAAGACTTGAGTTATAAAGAGGAAGCGGTTCAGATCCTCGACAGAAA
GGAGCAAGTTTTGAGGAACAAAATTATCCCACTCGTGAAACTTCTTTGGAGACATCACGAAGTTGAGGAGACAACTTGGGAGTCAGAAGATCAAATGAGGAGGAGAAAAG
CTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTGTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCA
AAGCAGGAGGATCTCTGGTTTTCTCCGGTTTTTCGAGCATTATGGGGTGTACAAGTTATATCAGAAGCTCTATTTGGCCAAGAGGAAATAAGTGATGTGGACTTTTCCTA
CCGCAAGCGCACTGGTCAAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATA
CACTGCCAACGTCTGCTAAAAGCTTCAGAACAAGCTCCAGGTCAACAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCTGTCTTTCGAACTAAGCTAGCAGGT
GGTTCGGGAGGGGTGGATTATGGACTCCTGTCCATGAGGGAATGTTCTTTGATTTGTACAAGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGCGGACA
AGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCTTTCCTGATATTAGGCGTCGCGACGCTGCGACGACTTCTGCCCCAAGACAACATGACGTCA
CAACGTCGAGACGCTGTGACGTAGCGTCGAGACGCTGTCGACTTGTTCAGCAAGAAAGGTCCGGATTTTGCACTATAAAAAGGGCCCTTCCCTTTGGTCCATTAGGTCCC
ATCGGTAGCTCACCAGGGGCATTGAGATCGCTTCGTTGGGTTCATAAAGTTCAGCAAGATCATTCCAAAAAGGTTGCTGTATTTTCTGCGCTCCGTTTGGGAATTTGGCA
AAACGATCAAGAATCTCTTCAAGGAAGCCTAATCTGCCCTATTTCCCAGTCGAAATCGAAAGGGGATGCATCATCTGTAGATTCTCGGTCAACCAAGAAAAGGCTTCAAC
TTCTGCCAATTTTCCCGGTTGATCGAGAATCTGCAGATGATGAATCCCGACCAGGATTCATCTCGATTCTAGAAACCGAACTGGCTACACCACATATTCGTCTTCTTCTT
CACTCTACTCTCCTCAGAAACCACCGACGCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGAAATATATTCTAGATCCATCCCATGTGTTGCAAGTGCAACCGATTGAGCTGAAGGAAGACTTGAGTTATAAAGAGGAAGCGGTTCAGATCCTCGACAGAAA
GGAGCAAGTTTTGAGGAACAAAATTATCCCACTCGTGAAACTTCTTTGGAGACATCACGAAGTTGAGGAGACAACTTGGGAGTCAGAAGATCAAATGAGGAGGAGAAAAG
CTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTGTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCA
AAGCAGGAGGATCTCTGGTTTTCTCCGGTTTTTCGAGCATTATGGGGTGTACAAGTTATATCAGAAGCTCTATTTGGCCAAGAGGAAATAAGTGATGTGGACTTTTCCTA
CCGCAAGCGCACTGGTCAAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATA
CACTGCCAACGTCTGCTAAAAGCTTCAGAACAAGCTCCAGGTCAACAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCTGTCTTTCGAACTAAGCTAGCAGGT
GGTTCGGGAGGGGTGGATTATGGACTCCTGTCCATGAGGGAATGTTCTTTGATTTGTACAAGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGCGGACA
AGACCGAGTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCTTTCCTGATATTAGGCGTCGCGACGCTGCGACGACTTCTGCCCCAAGACAACATGACGTCA
CAACGTCGAGACGCTGTGACGTAGCGTCGAGACGCTGTCGACTTGTTCAGCAAGAAAGGTCCGGATTTTGCACTATAAAAAGGGCCCTTCCCTTTGGTCCATTAGGTCCC
ATCGGTAGCTCACCAGGGGCATTGAGATCGCTTCGTTGGGTTCATAAAGTTCAGCAAGATCATTCCAAAAAGGTTGCTGTATTTTCTGCGCTCCGTTTGGGAATTTGGCA
AAACGATCAAGAATCTCTTCAAGGAAGCCTAATCTGCCCTATTTCCCAGTCGAAATCGAAAGGGGATGCATCATCTGTAGATTCTCGGTCAACCAAGAAAAGGCTTCAAC
TTCTGCCAATTTTCCCGGTTGATCGAGAATCTGCAGATGATGAATCCCGACCAGGATTCATCTCGATTCTAGAAACCGAACTGGCTACACCACATATTCGTCTTCTTCTT
CACTCTACTCTCCTCAGAAACCACCGACGCATTTAA
Protein sequenceShow/hide protein sequence
MLRKYILDPSHVLQVQPIELKEDLSYKEEAVQILDRKEQVLRNKIIPLVKLLWRHHEVEETTWESEDQMRRRKAHAKPAIAESEFNLSTSGFVFGLSYTEGTKRAQDFRA
KQEDLWFSPVFRALWGVQVISEALFGQEEISDVDFSYRKRTGQISIDYMTEILSPRLYGTVCTQVEIELSVPDTLPTSAKSFRTSSRSTGIVRGDDVCWLHAVFRTKLAG
GSGGVDYGLLSMRECSLICTSESGLFADSISLPFCGQDRVGSWEHSLTRWNSLFPDIRRRDAATTSAPRQHDVTTSRRCDVASRRCRLVQQERSGFCTIKRALPFGPLGP
IGSSPGALRSLRWVHKVQQDHSKKVAVFSALRLGIWQNDQESLQGSLICPISQSKSKGDASSVDSRSTKKRLQLLPIFPVDRESADDESRPGFISILETELATPHIRLLL
HSTLLRNHRRI