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Lag0026462 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026462
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr10:37270502..37271347
RNA-Seq ExpressionLag0026462
SyntenyLag0026462
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066569.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-1168.09Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y V+ G     GFL PYRG+RYHL EWRG  NAP+T KEFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
TYK15303.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.2e-1168.09Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y V+ G     GFL PYRG+RYHL EWRG  NAP+T KEFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
XP_008466673.1 PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]1.2e-1086.84Show/hide
Query:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        PKGFL  YRGERYHLSEWRG GNAPTT +EFFNMKHSS
Subjt:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
XP_038885881.1 protein ALP1-like [Benincasa hispida]1.9e-1172.34Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y   VG    +GFL PY+GERYHLSEWRG GNAPT P+EFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
XP_038895742.1 protein ALP1-like [Benincasa hispida]1.9e-1172.34Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y    G    +GFL PYRGERYHLS+WRGVGNAPTT +EFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
TrEMBL top hitse value%identityAlignment
A0A1S3CRU3 uncharacterized protein LOC1035040275.8e-1186.84Show/hide
Query:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        PKGFL  YRGERYHLSEWRG GNAPTT +EFFNMKHSS
Subjt:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
A0A5A7U476 Retrotransposon protein7.6e-1170.21Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y V  G Q  +GFL PYRG+RYHL EWRG  NAP+T KEFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
A0A5A7VMV2 Retrotransposon protein4.4e-1168.09Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y V+ G     GFL PYRG+RYHL EWRG  NAP+T KEFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
A0A5D3CQK6 Putative nuclease HARBI15.8e-1186.84Show/hide
Query:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        PKGFL  YRGERYHLSEWRG GNAPTT +EFFNMKHSS
Subjt:  PKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
A0A5D3CTT5 Putative nuclease HARBI14.4e-1168.09Show/hide
Query:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        Y V+ G     GFL PYRG+RYHL EWRG  NAP+T KEFFNMKHSS
Subjt:  YFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.5e-0645.1Show/hide
Query:  LLRTYFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS
        L + Y V  G      FL P+RG RYHL E+ G    P TP E FN++H S
Subjt:  LLRTYFVFVGTQRPKGFLTPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTGGTGTAGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTTGGGGGAGATGGGTTCCAACGTTCCAGATGATGCAGTAGACCTCAG
TGGATCCCCAGAGAACAACATCCCCATCCCACCGTTCACCATGCCTACTGCAAACATGTCAGAGGATAAGCCTTGGGGGACGCCAGACAGTCGAACTTGCCCAACCGGAA
ATTCATCACGTGGGAGTAAGAGGAAGAGATCTGGATCTAACATGCACATTGTAGAACTTCTTCGGACTTACTTCGTTTTCGTTGGAACGCAGCGGCCAAAGGGTTTCCTG
ACACCGTATAGAGGGGAACGTTACCACCTTTCTGAATGGCGTGGTGTAGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTTGGGGGAGATG
GGTTCCAACGTTCCAGATGATTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTGGTGTAGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTTGGGGGAGATGGGTTCCAACGTTCCAGATGATGCAGTAGACCTCAG
TGGATCCCCAGAGAACAACATCCCCATCCCACCGTTCACCATGCCTACTGCAAACATGTCAGAGGATAAGCCTTGGGGGACGCCAGACAGTCGAACTTGCCCAACCGGAA
ATTCATCACGTGGGAGTAAGAGGAAGAGATCTGGATCTAACATGCACATTGTAGAACTTCTTCGGACTTACTTCGTTTTCGTTGGAACGCAGCGGCCAAAGGGTTTCCTG
ACACCGTATAGAGGGGAACGTTACCACCTTTCTGAATGGCGTGGTGTAGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTTGGGGGAGATG
GGTTCCAACGTTCCAGATGATTCAGTAG
Protein sequenceShow/hide protein sequence
MTWCRECTNYSKRILQHEAFILGEMGSNVPDDAVDLSGSPENNIPIPPFTMPTANMSEDKPWGTPDSRTCPTGNSSRGSKRKRSGSNMHIVELLRTYFVFVGTQRPKGFL
TPYRGERYHLSEWRGVGNAPTTPKEFFNMKHSSWGRWVPTFQMIQ