; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026504 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026504
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:38059610..38065067
RNA-Seq ExpressionLag0026504
SyntenyLag0026504
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-1942.33Show/hide
Query:  GRGHKAEKLWLARRRGHQAEKFWLACYIPLLTLSVLRDNDAFVSGGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRSVEIELPVPDTLPTSAESSKT
        G+  K + +    R   Q+ +       PL TLSVLRDNDA                                       VEIELPVPDTLPTSAESS++
Subjt:  GRGHKAEKLWLARRRGHQAEKFWLACYIPLLTLSVLRDNDAFVSGGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRSVEIELPVPDTLPTSAESSKT

Query:  SSS----------------YLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        +SS                Y  NQV+  LHLVF+V VG TGIVRGDDVCWLH VFRAK  GGP
Subjt:  SSS----------------YLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-2082.09Show/hide
Query:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        VEIEL VPDTLPTSAES  ++SSY  NQV+ GLHLVFNVSVG TGIVRGDDVC LHVVFRAK AGGP
Subjt:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.8e-3456.17Show/hide
Query:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP
        +KL+L   RG+    Q  +        L TLSVLRDNDA VS GGPHYDKDDG+A RAPLHRR SKRWLYWACPT RRS             VEIEL VP
Subjt:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP

Query:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS
        DTLPTSAESS+++S                      GIVRGDDVCWLHVVFRAK  GGP  S
Subjt:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.8e-3456.17Show/hide
Query:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP
        +KL+L   RG+    Q  +        L TLSVLRDNDA VS GGPHYDKDDG+A RAPLHRR SKRWLYWACPT RRS             VEIEL VP
Subjt:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP

Query:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS
        DTLPTSAESS+++S                      GIVRGDDVCWLHVVFRAK  GGP  S
Subjt:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.7e-2179.1Show/hide
Query:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        VEIELPVPDTLPTS ESS+++SSY  NQV+ GLHLVFN+SV  TGIVRGDDVCWLH VFRAK  GGP
Subjt:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.2e-1942.33Show/hide
Query:  GRGHKAEKLWLARRRGHQAEKFWLACYIPLLTLSVLRDNDAFVSGGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRSVEIELPVPDTLPTSAESSKT
        G+  K + +    R   Q+ +       PL TLSVLRDNDA                                       VEIELPVPDTLPTSAESS++
Subjt:  GRGHKAEKLWLARRRGHQAEKFWLACYIPLLTLSVLRDNDAFVSGGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRSVEIELPVPDTLPTSAESSKT

Query:  SSS----------------YLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        +SS                Y  NQV+  LHLVF+V VG TGIVRGDDVCWLH VFRAK  GGP
Subjt:  SSS----------------YLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.5e-2082.09Show/hide
Query:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        VEIEL VPDTLPTSAES  ++SSY  NQV+ GLHLVFNVSVG TGIVRGDDVC LHVVFRAK AGGP
Subjt:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

A0A5A7VGQ5 Uncharacterized protein1.4e-3456.17Show/hide
Query:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP
        +KL+L   RG+    Q  +        L TLSVLRDNDA VS GGPHYDKDDG+A RAPLHRR SKRWLYWACPT RRS             VEIEL VP
Subjt:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP

Query:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS
        DTLPTSAESS+++S                      GIVRGDDVCWLHVVFRAK  GGP  S
Subjt:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS

A0A5D3BG85 Uncharacterized protein1.4e-3456.17Show/hide
Query:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP
        +KL+L   RG+    Q  +        L TLSVLRDNDA VS GGPHYDKDDG+A RAPLHRR SKRWLYWACPT RRS             VEIEL VP
Subjt:  EKLWLARRRGH----QAEKFWLACYIPLLTLSVLRDNDAFVS-GGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRS-------------VEIELPVP

Query:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS
        DTLPTSAESS+++S                      GIVRGDDVCWLHVVFRAK  GGP  S
Subjt:  DTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGPVSS

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.3e-2179.1Show/hide
Query:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP
        VEIELPVPDTLPTS ESS+++SSY  NQV+ GLHLVFN+SV  TGIVRGDDVCWLH VFRAK  GGP
Subjt:  VEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFRAKLAGGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTTCTCCTTCTTCTATGGAATCTCCTTCTCTTCCTTCCTCGATTTCTCCCACTGCTGTCTTGATGTCTGTGTATTTCTCCCTCCTTTTTGGGCTACATCAGCT
TCTTTTCAGCAAGATGGCAGCCTCCCATTGGATGAAAGAGCTGATTGTACTAAAAAGTGCCAGCTCATTTAATGAATTGATTTTTCCCTCGTGTGAATCACGTGCAAGCT
TTGCTCCAGAATTGATCCAGCAATTTCATCTCCAGCTCCTCAATCACTTCAACTCTACACATGCTGCCTTTAGTCTGCTACCACAATGGCTTAATGGATCTGCACTAAAA
ACTTGGTTAGTCCAGGCTCGCATGATGGGCTCACATCAGTTGAGGCGAGGTAGACTCGGTAGTCCAGGCTCGCCTGTTGTGAAGACGCTCAGGCCAGATGAGGCTCACGT
AATCTTAATCTGGATGAGGCGAGGTCGACTCGATAGTCCAAGCTCGCCTGATGTAAAGATGCTTAGGCCAGATGAGGTGAGGCGTGGGCACTACTGGCTCGCTGAAGTGT
GGCTCTATAGGCTCGCATGTGGGCGTGGGCACAAAGCTGAAAAGCTTTGGCTCGCACGTAGGCGTGGGCACCAAGCTGAAAAGTTCTGGCTCGCATGTTATATTCCGTTG
TTGACGTTGAGTGTACTCCGTGACAACGATGCTTTCGTGAGTGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGACGGGCCCCACTACATCGTAGGATTAGTAA
ACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAAACAAGCTCCAGTT
ATCTTCCAAACCAAGTTTTGTTAGGGCTGCACCTCGTGTTCAACGTTTCAGTAGGGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGTCGTCTTTCGG
GCTAAGCTAGCAGGTGGTCCGGTGTCGTCTTGGGCTCGAAATCATCCTTGCCTCATGACCCATGATCCGTTTGGCCTTAAACTCGAACACCCACTGTCTAGGGAGTCTAG
ACAAATAACTGTGAGAAAAGAGGTCATGGACCTAAAATGTGAGAAAAGAGAAAAAGGGGTGAATGTTAGTGCACCTCGGGTACAAATGGCCGAGGGGTGGCATGTCATCA
TTGGTTTAAAGAGGACTAGCTTTGTGGTTGAGATTATCAGGGCCTCGGGTGTAAATGGTTGTTGGGTTCCTAGACGGATTCCTCCCGGAACTCCGGATCTTTTGGGATGT
GTTTCAACCCCAATGAAGAGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTTTTCTGCTCCAGTTT
TGCTGCAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGCTTCTCCTTCTTCTATGGAATCTCCTTCTCTTCCTTCCTCGATTTCTCCCACTGCTGTCTTGATGTCTGTGTATTTCTCCCTCCTTTTTGGGCTACATCAGCT
TCTTTTCAGCAAGATGGCAGCCTCCCATTGGATGAAAGAGCTGATTGTACTAAAAAGTGCCAGCTCATTTAATGAATTGATTTTTCCCTCGTGTGAATCACGTGCAAGCT
TTGCTCCAGAATTGATCCAGCAATTTCATCTCCAGCTCCTCAATCACTTCAACTCTACACATGCTGCCTTTAGTCTGCTACCACAATGGCTTAATGGATCTGCACTAAAA
ACTTGGTTAGTCCAGGCTCGCATGATGGGCTCACATCAGTTGAGGCGAGGTAGACTCGGTAGTCCAGGCTCGCCTGTTGTGAAGACGCTCAGGCCAGATGAGGCTCACGT
AATCTTAATCTGGATGAGGCGAGGTCGACTCGATAGTCCAAGCTCGCCTGATGTAAAGATGCTTAGGCCAGATGAGGTGAGGCGTGGGCACTACTGGCTCGCTGAAGTGT
GGCTCTATAGGCTCGCATGTGGGCGTGGGCACAAAGCTGAAAAGCTTTGGCTCGCACGTAGGCGTGGGCACCAAGCTGAAAAGTTCTGGCTCGCATGTTATATTCCGTTG
TTGACGTTGAGTGTACTCCGTGACAACGATGCTTTCGTGAGTGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGACGGGCCCCACTACATCGTAGGATTAGTAA
ACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAAACAAGCTCCAGTT
ATCTTCCAAACCAAGTTTTGTTAGGGCTGCACCTCGTGTTCAACGTTTCAGTAGGGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGTCGTCTTTCGG
GCTAAGCTAGCAGGTGGTCCGGTGTCGTCTTGGGCTCGAAATCATCCTTGCCTCATGACCCATGATCCGTTTGGCCTTAAACTCGAACACCCACTGTCTAGGGAGTCTAG
ACAAATAACTGTGAGAAAAGAGGTCATGGACCTAAAATGTGAGAAAAGAGAAAAAGGGGTGAATGTTAGTGCACCTCGGGTACAAATGGCCGAGGGGTGGCATGTCATCA
TTGGTTTAAAGAGGACTAGCTTTGTGGTTGAGATTATCAGGGCCTCGGGTGTAAATGGTTGTTGGGTTCCTAGACGGATTCCTCCCGGAACTCCGGATCTTTTGGGATGT
GTTTCAACCCCAATGAAGAGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTTTTCTGCTCCAGTTT
TGCTGCAGCATAG
Protein sequenceShow/hide protein sequence
MSASPSSMESPSLPSSISPTAVLMSVYFSLLFGLHQLLFSKMAASHWMKELIVLKSASSFNELIFPSCESRASFAPELIQQFHLQLLNHFNSTHAAFSLLPQWLNGSALK
TWLVQARMMGSHQLRRGRLGSPGSPVVKTLRPDEAHVILIWMRRGRLDSPSSPDVKMLRPDEVRRGHYWLAEVWLYRLACGRGHKAEKLWLARRRGHQAEKFWLACYIPL
LTLSVLRDNDAFVSGGPHYDKDDGSAGRAPLHRRISKRWLYWACPTQRRSVEIELPVPDTLPTSAESSKTSSSYLPNQVLLGLHLVFNVSVGPTGIVRGDDVCWLHVVFR
AKLAGGPVSSWARNHPCLMTHDPFGLKLEHPLSRESRQITVRKEVMDLKCEKREKGVNVSAPRVQMAEGWHVIIGLKRTSFVVEIIRASGVNGCWVPRRIPPGTPDLLGC
VSTPMKSDRSSTRQLAIPSSVTGVHQYTMIVVFCSSFAAA