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Lag0026508 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026508
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:38141233..38141541
RNA-Seq ExpressionLag0026508
SyntenyLag0026508
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3468943.1 reverse transcriptase [Gossypium australe]1.9e-2046.15Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIK--DTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK   + M ++RR+  F CG+EV + G  GGL L W ++  V +RS+S+ HID IIK  D    WRFTG+YG+P  + ++  WNLLKRL  +   PW+
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIK--DTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
        + GD
Subjt:  LGGD

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]2.6e-2253.47Show/hide
Query:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGG
        ETK       + +REL FDC + V S G+SGGLMLLWN +++V I+S S GHID+II D   SWRFTG YGNP    R  +W LL+RL    ++PWI+GG
Subjt:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGG

Query:  D
        D
Subjt:  D

XP_023871998.1 uncharacterized protein LOC111984613 [Quercus suber]2.4e-2048.08Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII--KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK  V     I+  L+   G+ VPS+ +SGGL+LLW +E  V ++SYS  HIDAI+   D ++ WRFTG YGNP+   R E+W LLKRL  ++ +PW+
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII--KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
          GD
Subjt:  LGGD

XP_023903659.1 uncharacterized protein LOC112015491 [Quercus suber]4.2e-2048.08Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII--KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK  V     I+  L+   G+ VPS+ +SGGL+LLW +E  V ++SYS  HIDAI+   D ++ WRFTG YGNP+   R E+W LLKRL  ++ +PW+
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII--KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
          GD
Subjt:  LGGD

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]1.1e-2045.63Show/hide
Query:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNR--SWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWIL
        ETK  V  M  ++R L ++C   V S G+SGGL L+W +ET++ ++SYS+ HIDA+I +      W+FTGVYG+P+ E R ETWN ++ LR    +PW++
Subjt:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNR--SWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWIL

Query:  GGD
         GD
Subjt:  GGD

TrEMBL top hitse value%identityAlignment
A0A1U8HV94 uncharacterized protein LOC1078899124.5e-2048.08Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRS--WRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK   N M +IRR   F  GI+V S G  GGL L W  +  + +RS+S+ HID II+DT+    WRFTG YG+   + R+E+W+LLK LR   E+PW 
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRS--WRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
        + GD
Subjt:  LGGD

A0A5B6V3U4 Reverse transcriptase4.5e-2046.6Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTN-RSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWIL
        METK   N M K+RR   F  GIEV + G  GGL L W +E  V +R++SR HID +IK+ N   WR+TG YG+P  + ++  WN+L+RL  + E PW++
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTN-RSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWIL

Query:  GGD
         GD
Subjt:  GGD

A0A5B6VIP7 Reverse transcriptase9.1e-2146.15Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIK--DTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK   + M ++RR+  F CG+EV + G  GGL L W ++  V +RS+S+ HID IIK  D    WRFTG+YG+P  + ++  WNLLKRL  +   PW+
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIK--DTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
        + GD
Subjt:  LGGD

A0A5B6WSX4 Reverse transcriptase5.9e-2045.19Show/hide
Query:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTN--RSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI
        METK     M  +RR   FD GIEV + G  GGL L W ++ DV ++S+S+ HID +IK+ N    W+FTG YG+P  + ++  W+LLKRL  +S+ PW+
Subjt:  METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTN--RSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWI

Query:  LGGD
        + GD
Subjt:  LGGD

A0A6J1DUG8 uncharacterized protein LOC1110241351.3e-2253.47Show/hide
Query:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGG
        ETK       + +REL FDC + V S G+SGGLMLLWN +++V I+S S GHID+II D   SWRFTG YGNP    R  +W LL+RL    ++PWI+GG
Subjt:  ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGG

Query:  D
        D
Subjt:  D

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCAAATTCCGAGTTAATGGTATGGTGAAAATTAGAAGAGAGCTTCAATTTGATTGTGGTATTGAAGTTCCAAGTATGGGACAAAGTGGTGGTTTGATGCTTCT
GTGGAATCAAGAGACGGACGTAGTAATTCGGTCTTATTCAAGGGGACATATCGATGCGATAATAAAAGACACAAACAGGAGTTGGAGATTTACAGGAGTCTATGGGAATC
CTAACCGAGAGTTTCGACATGAGACGTGGAATCTGCTGAAAAGATTAAGAGTGGACTCAGAAATCCCTTGGATTCTAGGCGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCAAATTCCGAGTTAATGGTATGGTGAAAATTAGAAGAGAGCTTCAATTTGATTGTGGTATTGAAGTTCCAAGTATGGGACAAAGTGGTGGTTTGATGCTTCT
GTGGAATCAAGAGACGGACGTAGTAATTCGGTCTTATTCAAGGGGACATATCGATGCGATAATAAAAGACACAAACAGGAGTTGGAGATTTACAGGAGTCTATGGGAATC
CTAACCGAGAGTTTCGACATGAGACGTGGAATCTGCTGAAAAGATTAAGAGTGGACTCAGAAATCCCTTGGATTCTAGGCGGTGATTGA
Protein sequenceShow/hide protein sequence
METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD