CuGenDBv2

Gene ID	Lag0026543
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	chr10:38683015..38684207
RNA-Seq Expression	Lag0026543
Synteny	Lag0026543
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

3.2e-60

70.68

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK VYDSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

4.2e-60

70.16

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK VYDSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYL+RKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

3.0e-58

68.59

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN++CYVDINSNK V+DSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKD+YP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQ+V SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

1.4e-58

69.11

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK V+DSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKD+YP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQ+V SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

1.4e-58

69.63

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK V+DSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPK KKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

2.0e-60

70.16

Show/hide

Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK VYDSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYL+RKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

1.6e-60

70.68

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK VYDSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

1.6e-60

70.68

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK VYDSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKDAYP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQHV SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

1.5e-58

68.59

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN++CYVDINSNK V+DSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKD+YP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQ+V SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

6.6e-59

69.11

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Query:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------
        TRQA TPEQIN+ACYVDINSNK V+DSLRNNPKVHYDGRRFSYKSKHDLKD NQLLYLIRKF EGIAVIDLKD+YP+VMEDLQ LKASGQ          
Subjt:  TRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ----------

Query:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN
                                             DLQKNGMKPATNTAKRRANAQ+V SSKPKPKKKKQEISKRTKLTNAHL ELFKN
Subjt:  -------------------------------------DLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

3.5e-44

53.89

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Query:  FTTRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASG---------
        +  R ALTPEQIN+ C+VD+++NK V+DSLR NPK HYDGRRFSYK+ HD+ D NQLL L+RK+ +GIAV+DLKDAYP VMEDL+ L ASG         
Subjt:  FTTRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASG---------

Query:  ------------------------------------QDLQKNGMKPATNTAKRRANAQ-HVTSSKPK-PKKKKQEISKRTKLTNAHLLELFKN
                                            ++L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEISKRTKLTNAHL ELF+N
Subjt:  ------------------------------------QDLQKNGMKPATNTAKRRANAQ-HVTSSKPK-PKKKKQEISKRTKLTNAHLLELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

2.8e-38

48.97

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Query:  FTTRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ--------
        F TR A T EQIN+ACYVD+++NK V+DSLR NPKVHYDGRRFSYK+ H++KD  QLL  + K  + I V DLKDAYP VMEDL+ LK+SG+        
Subjt:  FTTRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYPTVMEDLQGLKASGQ--------

Query:  --------------------------------------DLQKNGMKPATNTAKRRANAQ-HVTSSKPK-PKKKKQEISKRTKLTNAHLLELFKN
                                              +L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+LELF++
Subjt:  --------------------------------------DLQKNGMKPATNTAKRRANAQ-HVTSSKPK-PKKKKQEISKRTKLTNAHLLELFKN

Sequences

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CDS sequence

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ATGTCTGTGCTTCTTAGCATAATGTTAATCTCCTCACTCTTCCACTCTCTGGGTTTTGAATCAACTATGAGAAAGTTTGTGAATCGTTTTTTCTCTTTTACTACAAGACA
AGCCCTTACACCAGAGCAAATCAATGATGCATGTTATGTTGATATAAATTCCAACAAAACTGTTTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGAC
GTTTCTCATACAAGTCCAAGCATGACCTGAAGGACATGAATCAACTTCTATACTTGATACGGAAATTTCGAGAAGGCATTGCTGTCATTGATCTCAAAGATGCTTATCCA
ACCGTTATGGAAGACTTGCAAGGTCTAAAAGCCTCTGGCCAGGATCTTCAGAAGAATGGGATGAAGCCTGCAACCAACACAGCAAAGAGGCGAGCCAATGCACAACACGT
GACATCCTCGAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCTTGAGCTCTTCAAAAATTAG

mRNA sequence

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Protein sequence

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MSVLLSIMLISSLFHSLGFESTMRKFVNRFFSFTTRQALTPEQINDACYVDINSNKTVYDSLRNNPKVHYDGRRFSYKSKHDLKDMNQLLYLIRKFREGIAVIDLKDAYP
TVMEDLQGLKASGQDLQKNGMKPATNTAKRRANAQHVTSSKPKPKKKKQEISKRTKLTNAHLLELFKN

Lag0026543 (gene) of Sponge gourd (AG-4) v1 genome