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Lag0026608 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026608
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr10:39625991..39627123
RNA-Seq ExpressionLag0026608
SyntenyLag0026608
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR026960 - Reverse transcriptase zinc-binding domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4347944.1 hypothetical protein G4B88_014951 [Cannabis sativa]4.9e-1044.16Show/hide
Query:  DKLVWHSE-NDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVA
        D + WHS  N +Y+V S YKL       A CSN   ++ WWKF+WG  + +K+K F WR++H +LPT + L RR +A
Subjt:  DKLVWHSE-NDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVA

KAF4380736.1 hypothetical protein F8388_017090 [Cannabis sativa]2.9e-1045.45Show/hide
Query:  DKLVWH-SENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVA
        D + WH + N  Y+V S YKL  +    A CSNL  ++ WWKF+WG  +  K+K F WRL+H +LPT + L RR +A
Subjt:  DKLVWH-SENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVA

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]3.0e-1250Show/hide
Query:  SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT
        S D LVW H+ N +YTVQS Y LA+ L E  + S+     KWWK  W  Q+P KIKIF WR+ HD LP   +L +R V T
Subjt:  SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT

XP_037480834.1 uncharacterized protein LOC119358354 [Triticum dicoccoides]1.3e-1026.38Show/hide
Query:  HSENDLYTVQSDYKLA-------NMLKEGA-NCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT------SRETQTS-------
        +++N +YTV+S Y L        N    G+ + SN  +M+K WK LW  Q P+K+KI  WR+ H+ LPT   L +R +AT       RE Q S       
Subjt:  HSENDLYTVQSDYKLA-------NMLKEGA-NCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT------SRETQTS-------

Query:  --------------------SFGAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQSNQRD-----------
                              G +IRN  G V+      +  V + +  EA+A++ +L    + GF ++ VETD A +   ++S   D           
Subjt:  --------------------SFGAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQSNQRD-----------

Query:  -----------FSKCRREANRVAHAAAKMVLERGVKGIWLEEVLAMLDEVYCNE
                   F+   R  N  AH  AK   E      W      ++  + C E
Subjt:  -----------FSKCRREANRVAHAAAKMVLERGVKGIWLEEVLAMLDEVYCNE

XP_041028005.1 uncharacterized protein LOC121267980 [Juglans microcarpa x Juglans regia]8.9e-1232.03Show/hide
Query:  MSQDKLVWHSE-NDLYTVQSDYKLA--NMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS-------RETQTSSFG
        +S+DK +W +E N++++V+S Y     +M  + A  S ++ +   WK LW  ++PNK+KIF WR+  + LPT  NL ++ V T         E   +   
Subjt:  MSQDKLVWHSE-NDLYTVQSDYKLA--NMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS-------RETQTSSFG

Query:  AIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDS
        A++R+  G V++ V +    +  + +LE MAI   L L   +G  +L +E+DS
Subjt:  AIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDS

TrEMBL top hitse value%identityAlignment
A0A2N9GSM5 Uncharacterized protein1.1e-1225.84Show/hide
Query:  QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSF----------
        +DKL+W  E   +Y+V+S Y+L    M      CS+  + +++WK +W  Q+P+K++ F WR   + LPT+VN+QRR +  S       F          
Subjt:  QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSF----------

Query:  --------------------------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQ
                                              G IIR+G+G  +  + +    +  VD  EA+A +E+L   GE+G T  E E DS  +   ++
Subjt:  --------------------------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQ

Query:  SNQRDF-----------------SKC-----RREANRVAHAAAKMVLERGVKG-IWLEEVLAMLDEV
        S  + F                 S+C     + E N VAH  A+  ++      +WLE+V   L+ V
Subjt:  SNQRDF-----------------SKC-----RREANRVAHAAAKMVLERGVKG-IWLEEVLAMLDEV

A0A2N9IZ60 Uncharacterized protein3.0e-1325.91Show/hide
Query:  QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSF----------
        +DKL+W  E   +Y+V+S Y+L    M      CS+  + +++WK +W  Q+P+K++ F WR   + LPT+VN+QRR +  S       F          
Subjt:  QDKLVWHSEN-DLYTVQSDYKL--ANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSF----------

Query:  --------------------------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQ
                                              G IIR+G+G  +  + +    +  VD  EA+A +E+L   GE+G T  E E DS  +   ++
Subjt:  --------------------------------------GAIIRNGKGEVMLTVGRLVQFVQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQ

Query:  SNQRDF-----------------SKC-----RREANRVAHAAAKMVLERGVKG-IWLEEVLAMLDEVYCNEVLG
        S  + F                 S+C     + E N VAH  A+  ++      +WLE+V   L+ V   E +G
Subjt:  SNQRDF-----------------SKC-----RREANRVAHAAAKMVLERGVKG-IWLEEVLAMLDEVYCNEVLG

A0A803P623 Uncharacterized protein1.5e-1250Show/hide
Query:  SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT
        S D LVW H+ N +YTVQS Y LA+ L E  + S+     KWWK  W  Q+P KIKIF WR+ HD LP   +L +R V T
Subjt:  SQDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVAT

A0A803Q7D4 Uncharacterized protein1.5e-1247.5Show/hide
Query:  QDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS
        +DKL+W HSEN  YTV+S Y LA  L++  + S    +R WW  LW   +P K+KIF WR+ +D LPT VNL  R ++ S
Subjt:  QDKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS

A0A803QH76 Uncharacterized protein1.1e-1250.63Show/hide
Query:  DKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS
        DK++W HS++  YTVQS Y LA  L    + S+    RKWW  LW  Q+P K+KIF WRL +D LPT VNL  R +A+S
Subjt:  DKLVW-HSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAGGATAAGCTAGTTTGGCATAGTGAAAATGACCTTTATACGGTTCAGAGCGACTATAAGTTGGCTAATATGTTGAAAGAAGGGGCAAACTGCTCAAATCTGAA
ACTGATGAGGAAATGGTGGAAGTTCTTGTGGGGAAGACAGATGCCAAACAAAATTAAGATCTTTTGCTGGAGGTTGTACCATGACTTTTTACCCACTGTGGTTAATCTCC
AAAGAAGAGATGTAGCAACAAGCAGAGAAACCCAAACCAGTAGCTTTGGAGCTATTATTAGAAATGGAAAAGGGGAAGTGATGCTTACCGTTGGAAGGTTGGTACAATTT
GTGCAAGACGTGGACTCGTTGGAAGCTATGGCAATCCAAGAGAGCTTGTTACTAGAAGGAGAGGTTGGGTTCACGAGGTTGGAGGTGGAGACTGACTCAGCTCGTGTGGC
GGCCATGGTTCAATCAAACCAGAGAGATTTTTCGAAGTGCCGGAGAGAAGCCAACCGGGTGGCACACGCAGCAGCGAAAATGGTGTTGGAGCGAGGTGTGAAAGGGATCT
GGCTGGAGGAGGTGTTGGCGATGTTAGATGAGGTTTATTGCAACGAGGTTTTGGGCATTCAGCCTGTGGTGTCGAGGGCCCCTGTATTTGGTCTTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAGGATAAGCTAGTTTGGCATAGTGAAAATGACCTTTATACGGTTCAGAGCGACTATAAGTTGGCTAATATGTTGAAAGAAGGGGCAAACTGCTCAAATCTGAA
ACTGATGAGGAAATGGTGGAAGTTCTTGTGGGGAAGACAGATGCCAAACAAAATTAAGATCTTTTGCTGGAGGTTGTACCATGACTTTTTACCCACTGTGGTTAATCTCC
AAAGAAGAGATGTAGCAACAAGCAGAGAAACCCAAACCAGTAGCTTTGGAGCTATTATTAGAAATGGAAAAGGGGAAGTGATGCTTACCGTTGGAAGGTTGGTACAATTT
GTGCAAGACGTGGACTCGTTGGAAGCTATGGCAATCCAAGAGAGCTTGTTACTAGAAGGAGAGGTTGGGTTCACGAGGTTGGAGGTGGAGACTGACTCAGCTCGTGTGGC
GGCCATGGTTCAATCAAACCAGAGAGATTTTTCGAAGTGCCGGAGAGAAGCCAACCGGGTGGCACACGCAGCAGCGAAAATGGTGTTGGAGCGAGGTGTGAAAGGGATCT
GGCTGGAGGAGGTGTTGGCGATGTTAGATGAGGTTTATTGCAACGAGGTTTTGGGCATTCAGCCTGTGGTGTCGAGGGCCCCTGTATTTGGTCTTTGTTAG
Protein sequenceShow/hide protein sequence
MSQDKLVWHSENDLYTVQSDYKLANMLKEGANCSNLKLMRKWWKFLWGRQMPNKIKIFCWRLYHDFLPTVVNLQRRDVATSRETQTSSFGAIIRNGKGEVMLTVGRLVQF
VQDVDSLEAMAIQESLLLEGEVGFTRLEVETDSARVAAMVQSNQRDFSKCRREANRVAHAAAKMVLERGVKGIWLEEVLAMLDEVYCNEVLGIQPVVSRAPVFGLC