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Lag0026617 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026617
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:39687861..39688422
RNA-Seq ExpressionLag0026617
SyntenyLag0026617
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]4.5e-1029.45Show/hide
Query:  DTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGI---------------LHGELHDVSEVGLLMDDIRGILRPWDNGKVLFT
        D G+ R GC++R   G    A    +  C+SV++AE  A+Y+G+ +A+++ I               L+GE  D + V  ++ DI  +   + +    + 
Subjt:  DTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGI---------------LHGELHDVSEVGLLMDDIRGILRPWDNGKVLFT

Query:  SRQGNKVAHVLASLAFSYVD-----RVWLEEWPSEIADVLRSDVVS
         R+ NKVAH+LA    ++        VWLE++PS I + L+SD+++
Subjt:  SRQGNKVAHVLASLAFSYVD-----RVWLEEWPSEIADVLRSDVVS

KAF7837133.1 uncharacterized protein G2W53_005615 [Senna tora]5.8e-1031.65Show/hide
Query:  GEARG--GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQL---------------GILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFT
        G+ +G  GCV+R   G    A    +Q   S DL E +A  KG++LA+ L                ++HG   ++S +G+++DDIR  ++ +   K+ + 
Subjt:  GEARG--GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQL---------------GILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFT

Query:  SRQGNKVAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD
        SR  N VA  +A+ A +  + +VWL+++P  I+DVL +D
Subjt:  SRQGNKVAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD

XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]7.6e-1033.56Show/hide
Query:  ALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLA---------------RQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKV
        A+ D      G V+R A GEV +ATCL L+  + VD+AE  A+   +++A               +    L       + +G++++DI  + R   +   
Subjt:  ALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLA---------------RQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKV

Query:  LFTSRQGNKVAHVLASLAFSYVD-RVWLEEWPSEIADVLRSDVVSA
         F  R GN  AH LA L+ SY D RVW+EE PSEI+  + +D+ SA
Subjt:  LFTSRQGNKVAHVLASLAFSYVD-RVWLEEWPSEIADVLRSDVVSA

XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]2.2e-0934.59Show/hide
Query:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGIL-------HGELH--------DVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKV
        G V+R + G+V  ATCL +   + VD+ E  AM   + +A + G L       + +LH        D++  GL+  DI  +          F  R GN+V
Subjt:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGIL-------HGELH--------DVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKV

Query:  AHVLASLAFSYVD-RVWLEEWPSEIADVLRSDV
        AH LA L+  +V  RVWLEE+P EI +V+ +D+
Subjt:  AHVLASLAFSYVD-RVWLEEWPSEIADVLRSDV

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.2e-0933.83Show/hide
Query:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELH---------------DVSEVGLLMDDIRGILRPW-DNGKVLFTSRQGNK
        G ++R + G V++     L R   VD  EG+A+Y+G+ LA + G +  ++                D SEVG+L   I+  L    +     FT R GN 
Subjt:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELH---------------DVSEVGLLMDDIRGILRPW-DNGKVLFTSRQGNK

Query:  VAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD
         AH+LA LA +    ++W+EEWP EI+ VL  D
Subjt:  VAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD

TrEMBL top hitse value%identityAlignment
A0A5C7ITL2 RNase H domain-containing protein2.0e-0831.39Show/hide
Query:  GEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHD---------------VSEVGLLMDDIRGILRPWDNGKVLFTSR
        G +  GCV+R +DG V  + C     C+   +AE  A+  G +LA +LG+L   L                 +SEVG+++ DI  I   +    + F  R
Subjt:  GEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHD---------------VSEVGLLMDDIRGILRPWDNGKVLFTSR

Query:  QGNKVAHVLASLAFSYVDR-VWLEEWPSEIADVLRSD
          NKV H LA LA  +V R VW+ + P  +  ++  D
Subjt:  QGNKVAHVLASLAFSYVDR-VWLEEWPSEIADVLRSD

A0A6J1DAR4 uncharacterized protein LOC1110189547.0e-0932.48Show/hide
Query:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVD-R
        G ++    G+V  A    L+   SVD+AE  A  +G+QLA ++G +H  L D+SE G ++   +       +    F  R+GNK AH+LA  A    +  
Subjt:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVD-R

Query:  VWLEEWPSEIADVLRSD
        +W+E+WP E+   L  +
Subjt:  VWLEEWPSEIADVLRSD

A0A6J1DBJ7 uncharacterized protein LOC1110189731.1e-0933.83Show/hide
Query:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELH---------------DVSEVGLLMDDIRGILRPW-DNGKVLFTSRQGNK
        G ++R + G V++     L R   VD  EG+A+Y+G+ LA + G +  ++                D SEVG+L   I+  L    +     FT R GN 
Subjt:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELH---------------DVSEVGLLMDDIRGILRPW-DNGKVLFTSRQGNK

Query:  VAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD
         AH+LA LA +    ++W+EEWP EI+ VL  D
Subjt:  VAHVLASLAFSYVD-RVWLEEWPSEIADVLRSD

A0A6P9DWZ3 uncharacterized protein LOC1183440352.0e-0832.58Show/hide
Query:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLG----ILHGELHDVSEV-----------GLLMDDIRGILRPWDNGKVLFTSRQGNKV
        G V+  + GEV +  C  +       +AE  A+ +   L  +LG    IL G+ H V +V           G +++D+R ++R   N +V F  R+ N +
Subjt:  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLG----ILHGELHDVSEV-----------GLLMDDIRGILRPWDNGKVLFTSRQGNKV

Query:  AHVLASLAFSYVD-RVWLEEWPSEIADVLRSD
        AH L+ L F Y D RVW+EE P EI   +R +
Subjt:  AHVLASLAFSYVD-RVWLEEWPSEIADVLRSD

A0A803LHG6 Uncharacterized protein2.4e-0932Show/hide
Query:  TKGALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGI-----------LHGEL----HDVSEVGLLMDDIRGILRPWDN
        +  AL +T     G V+R   G+V  ATCL +   + VD+ E  AM   +++A + G            LH  L    +D +  G+++ DI  +     +
Subjt:  TKGALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGI-----------LHGEL----HDVSEVGLLMDDIRGILRPWDN

Query:  GKVLFTSRQGNKVAHVLASLAFSY-VDRVWLEEWPSEIADVLRSDVVSAA
            F  R+GNKVAH LA L+ ++   RVWLEE+PS I +++ +D  S++
Subjt:  GKVLFTSRQGNKVAHVLASLAFSY-VDRVWLEEWPSEIADVLRSDVVSAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGGGAGGCGTTTCCCAACAGGGGACTGCTTACGGATTCAACCGAGTGACCAAGGGAGCGTTGCCGGATACAGGGGAAGCAAGGGGTGGCTGTGTGCTGCGTGG
GGCTGATGGTGAGGTCTTTATGGCAACCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTATGTATAAAGGGGTCCAACTTGCTCGACAGT
TGGGAATCCTACATGGTGAGCTGCATGATGTGTCGGAAGTGGGGTTGCTGATGGATGACATTCGAGGAATCCTCCGTCCTTGGGACAATGGTAAGGTTTTGTTTACATCA
CGTCAGGGAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGATCGTGTTTGGCTTGAGGAGTGGCCTAGCGAAATTGCGGACGTCCTGAGGAGTGA
TGTTGTTTCAGCTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGGGAGGCGTTTCCCAACAGGGGACTGCTTACGGATTCAACCGAGTGACCAAGGGAGCGTTGCCGGATACAGGGGAAGCAAGGGGTGGCTGTGTGCTGCGTGG
GGCTGATGGTGAGGTCTTTATGGCAACCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTATGTATAAAGGGGTCCAACTTGCTCGACAGT
TGGGAATCCTACATGGTGAGCTGCATGATGTGTCGGAAGTGGGGTTGCTGATGGATGACATTCGAGGAATCCTCCGTCCTTGGGACAATGGTAAGGTTTTGTTTACATCA
CGTCAGGGAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGATCGTGTTTGGCTTGAGGAGTGGCCTAGCGAAATTGCGGACGTCCTGAGGAGTGA
TGTTGTTTCAGCTGCATGA
Protein sequenceShow/hide protein sequence
MLVGGVSQQGTAYGFNRVTKGALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTS
RQGNKVAHVLASLAFSYVDRVWLEEWPSEIADVLRSDVVSAA