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Lag0026627 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026627
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:39831482..39831847
RNA-Seq ExpressionLag0026627
SyntenyLag0026627
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023886789.1 uncharacterized protein LOC111998898 [Quercus suber]9.1e-0634.41Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPI-SSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM
        T +  E +A+L GI  +Q+++ ++  +FSDS  VV  + G++    S +  ++ Q++ L  +FS  S  HI R RN  AD L   A S+A S+
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPI-SSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM

XP_030923160.1 uncharacterized protein LOC115950050 [Quercus lobata]4.5e-0534.44Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPI-SSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNA
        T +  E +A+L G+ ++Q+M+ +   +FSDS  VV  + G+L    + +  ++ Q++ L   F+ LS SH+SR  N  AD L   A S+A
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPI-SSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNA

XP_030936650.1 uncharacterized protein LOC115961886 [Quercus lobata]2.6e-0530.53Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSMLW
        T +  E +A+L G+ ++Q++  ++A++FSDS  +V  + G+L    E +  ++ Q++ L T F     +H+SR  N   D L   A S+A+   W
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSMLW

XP_030936767.1 uncharacterized protein LOC115962042 [Quercus lobata]4.5e-0532.26Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM
        T +  E +A+L G+ ++Q++  ++  +FSDS  VV  + G+L    E +  +++Q++ L   F+  S  HISR +N  AD L   A+S+A+ +
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM

XP_030939953.1 uncharacterized protein LOC115964855 [Quercus lobata]9.1e-0632.26Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM
        T +  E +A+L G+ +++++  ++ ++FSDS  VV  + G+L    E +  +++Q + L T+F+  S  H+SR RN  AD L   A S+A+ +
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSM

TrEMBL top hitse value%identityAlignment
A0A2N9EUA9 Ribonuclease H6.3e-0534.83Show/hide
Query:  DGFHLLHTASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL
        DGF   +  +  E +A+LHG+R    +Q ++ H++ DS  VVN I GD     E +  ++++ ++L  +F  +   HISRD N  AD L
Subjt:  DGFHLLHTASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL

A0A2N9HR38 Ribonuclease H8.3e-0537.66Show/hide
Query:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL
        E +A+LHG+R    +Q +  HV+ DS  VVN I+GD     E +  ++++ ++L  +F  +   HISRD N  AD L
Subjt:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL

A0A2N9I552 Ribonuclease H7.5e-0637.65Show/hide
Query:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNA
        E +A+LHG+R    +Q +  HV+ DS  VVN I+G+    +E +  ++I+ ++L  +F  +   HISRD N  AD+L   AL+ A
Subjt:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNA

A0A2N9IJK7 Ribonuclease H2.2e-0536.17Show/hide
Query:  MEDDGFHLLHTASSR--EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL
        M +   HL   AS+   E +A+LHG+R    +Q +  HV+ DS  VVN I+GD     E +  ++++ ++L  +F  +   HISRD N  AD L
Subjt:  MEDDGFHLLHTASSR--EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSE-VYHWIIQIRELTTQFSKLSFSHISRDRNRRADLL

A0A446K5I3 RNase H domain-containing protein8.3e-0535.11Show/hide
Query:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSMLW
        +A S E+ AI +G+ L   + C +  + SDSSN V++I  +  +  EV  + ++ R L + F+K+   H  R+ N  AD + K+ALS   SM+W
Subjt:  TASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSMLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0433.33Show/hide
Query:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDAL
        E  A+   ++  Q +      + SDS  ++  IT + P S+E Y  I  I  L+  F+ +SFS + R  NR AD L K +L
Subjt:  EIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGCAGTTATGGAAGATGATGGATTCCACTTGCTACACACTGCTAGCAGCAGAGAGATTCAAGCAATTCTTCATGGAATTAGATTGTTGCAAAGGATGCAATGTGA
GACAGCACATGTTTTCTCGGATTCATCTAATGTAGTAAACATGATAACAGGAGACTTACCAATCTCATCTGAAGTATATCATTGGATCATCCAAATTAGGGAATTGACTA
CTCAGTTCTCTAAGCTTAGTTTTTCACATATTTCTAGGGATAGGAATAGGAGAGCAGATTTGCTAGTAAAGGATGCTTTGTCTAATGCTAGATCTATGCTTTGGTGTTAT
CGGATTTTCCGTCATGGTTATTCTCAACGGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGCAGTTATGGAAGATGATGGATTCCACTTGCTACACACTGCTAGCAGCAGAGAGATTCAAGCAATTCTTCATGGAATTAGATTGTTGCAAAGGATGCAATGTGA
GACAGCACATGTTTTCTCGGATTCATCTAATGTAGTAAACATGATAACAGGAGACTTACCAATCTCATCTGAAGTATATCATTGGATCATCCAAATTAGGGAATTGACTA
CTCAGTTCTCTAAGCTTAGTTTTTCACATATTTCTAGGGATAGGAATAGGAGAGCAGATTTGCTAGTAAAGGATGCTTTGTCTAATGCTAGATCTATGCTTTGGTGTTAT
CGGATTTTCCGTCATGGTTATTCTCAACGGGTATGA
Protein sequenceShow/hide protein sequence
MLAVMEDDGFHLLHTASSREIQAILHGIRLLQRMQCETAHVFSDSSNVVNMITGDLPISSEVYHWIIQIRELTTQFSKLSFSHISRDRNRRADLLVKDALSNARSMLWCY
RIFRHGYSQRV