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Lag0026640 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026640
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr10:39957976..39962432
RNA-Seq ExpressionLag0026640
SyntenyLag0026640
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5573941.1 hypothetical protein DKX38_001135 [Salix brachista]7.5e-0846.25Show/hide
Query:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIM-VDGVAKPNPAYET
        S+ S+ S  S ++ ++ L  + +M+T+ L SSNY+LW  Q  PLL  ++LFGFLDGTI+ P  T+   DGV KPNP Y +
Subjt:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIM-VDGVAKPNPAYET

KAF5754313.1 putative retrotransposon Copia-like protein [Helianthus annuus]7.5e-0840.7Show/hide
Query:  MASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET
        MAS +S+S+  S +   +++L+       +M+T+ L S+NY++W +QV PLL  +KL G++DGTI AP K  + DG   PNP Y +
Subjt:  MASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0747.5Show/hide
Query:  STSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYE
        S S+ SS ++ +L S IVLL+ I N+I++ LDS+NYVLW FQ++ LLK  KLFGF+DGT   P+           NP+Y+
Subjt:  STSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYE

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-0747.5Show/hide
Query:  STSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYE
        S S+ SS ++ +L S IVLL+ I N+I++ LDS+NYVLW FQ++ LLK  KLFGF+DGT   P+           NP+Y+
Subjt:  STSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYE

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]2.2e-0746.05Show/hide
Query:  SSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET
        SS + + LSS + LLT I N+I++ LDS+NY LW FQ  P+LK  KL+GF+D +I  P KTI     A  +   +T
Subjt:  SSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET

TrEMBL top hitse value%identityAlignment
A0A251RN08 Putative gag-polypeptide of LTR copia-type3.7e-0840.7Show/hide
Query:  MASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET
        MAS +S+S+  S +   +++L+       +M+T+ L S+NY++W +QV PLL  +KL G++DGTI AP K  + DG   PNP Y +
Subjt:  MASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET

A0A251UG76 Putative zinc finger, CCHC-type, Gag-polypeptide of LTR copia-type3.1e-0742.86Show/hide
Query:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAY
        S  SS S  + S L + +  I +M+T+ L S+NY+ WH Q+ PLL  + L G +DG++S P KTI  D   +PNPA+
Subjt:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAY

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein1.1e-0746.05Show/hide
Query:  SSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET
        SS + + LSS + LLT I N+I++ LDS+NY LW FQ  P+LK  KL+GF+D +I  P KTI     A  +   +T
Subjt:  SSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET

A0A5N5P5D8 Retrotran_gag_3 domain-containing protein3.7e-0846.25Show/hide
Query:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIM-VDGVAKPNPAYET
        S+ S+ S  S ++ ++ L  + +M+T+ L SSNY+LW  Q  PLL  ++LFGFLDGTI+ P  T+   DGV KPNP Y +
Subjt:  SAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIM-VDGVAKPNPAYET

A0A6J1D9L6 uncharacterized protein LOC1110188922.4e-0736.26Show/hide
Query:  RSTKFMASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET
        R + F +S+ + ++ S+ +K+ L S I LL+ I N++++ LDS++++LW FQ++ +LK  KLFGF+DG++SAP + +      +  P   T
Subjt:  RSTKFMASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGC
CCGCTCGTGCGGGCCGAGTCCGTTCGATGTCGTTTGGTCTCCACCGCCTTTGGCCGCCTCGGTTTCGCCCGAAGCTGTGGAAGACGTGACCTGCAAAACCAGTAAAAATC
GCTGCACACCGGCGTGGTGTAGGCCACACCGCCTCCGATGCTTAAGTCAGAAAACCGAGAAGGAGCTAGGAAGAATTCGAAGGTGTTTCGGGACGAACCAGGCGAAACCG
GGGCGATCCGGGGCATCACGGGTCGAAAGGAGCACGAAATTCATGGCTTCCATCGAGAGTACCTCTGCAATTTCATCTCCTTCAAAACAATCTCTCAGTTCTCTGATTGT
TCTCTTGACATACATCAGTAATATGATCACTGTTTGTCTGGATTCGTCCAATTATGTTCTTTGGCACTTTCAGGTTTCTCCTCTTCTCAAGGAACGCAAGTTGTTTGGCT
TTCTTGATGGCACAATTTCTGCTCCTGTGAAGACGATTATGGTTGATGGAGTTGCTAAACCTAATCCTGCCTATGAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGC
CCGCTCGTGCGGGCCGAGTCCGTTCGATGTCGTTTGGTCTCCACCGCCTTTGGCCGCCTCGGTTTCGCCCGAAGCTGTGGAAGACGTGACCTGCAAAACCAGTAAAAATC
GCTGCACACCGGCGTGGTGTAGGCCACACCGCCTCCGATGCTTAAGTCAGAAAACCGAGAAGGAGCTAGGAAGAATTCGAAGGTGTTTCGGGACGAACCAGGCGAAACCG
GGGCGATCCGGGGCATCACGGGTCGAAAGGAGCACGAAATTCATGGCTTCCATCGAGAGTACCTCTGCAATTTCATCTCCTTCAAAACAATCTCTCAGTTCTCTGATTGT
TCTCTTGACATACATCAGTAATATGATCACTGTTTGTCTGGATTCGTCCAATTATGTTCTTTGGCACTTTCAGGTTTCTCCTCTTCTCAAGGAACGCAAGTTGTTTGGCT
TTCTTGATGGCACAATTTCTGCTCCTGTGAAGACGATTATGGTTGATGGAGTTGCTAAACCTAATCCTGCCTATGAGACTTGA
Protein sequenceShow/hide protein sequence
MQGADEDNRGEIGLKDGPRRQNRQMGRAKTEGVGFSARSCGPSPFDVVWSPPPLAASVSPEAVEDVTCKTSKNRCTPAWCRPHRLRCLSQKTEKELGRIRRCFGTNQAKP
GRSGASRVERSTKFMASIESTSAISSPSKQSLSSLIVLLTYISNMITVCLDSSNYVLWHFQVSPLLKERKLFGFLDGTISAPVKTIMVDGVAKPNPAYET