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Lag0026684 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026684
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr10:40550900..40551779
RNA-Seq ExpressionLag0026684
SyntenyLag0026684
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EMS61574.1 Calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Triticum urartu]3.9e-0826.01Show/hide
Query:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIK
        L +HH+    ICPVC+   E   H+LF C R++ VWE            S E    W         ++ +A+A+L+GLRLA  LG+S + V SDS+ +++
Subjt:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIK

Query:  TIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG-RSSSQNLWLGNYPQWMVSLSICE
         I       ++      D   +  +F +      +R+ N   H++A+   R      W    P +++   + +
Subjt:  TIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG-RSSSQNLWLGNYPQWMVSLSICE

KAA3474873.1 Ribonuclease H-like superfamily protein [Gossypium australe]7.8e-0923.96Show/hide
Query:  WNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETF----------------FPSVV----------------------------GNEFESMEIKDRW
        +   + V+ ICP+CK++ E+TDH+L+ CG  R VW                   F  V                             G +F+  E+ + +
Subjt:  WNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETF----------------FPSVV----------------------------GNEFESMEIKDRW

Query:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NL
        +F + +  P + +A A    L  AK +G  ++ V  D++++IK+IK +    S I +    I+ +G SF+++V++F  R  N  +H     GR +     
Subjt:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NL

Query:  WLGNYPQWMVSLSICEQ
        W    P  ++S++  E+
Subjt:  WLGNYPQWMVSLSICEQ

KAG8481351.1 hypothetical protein CXB51_026276 [Gossypium anomalum]7.3e-0724.31Show/hide
Query:  MVNLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNE----FESMEIKDRWMFMSRLNGPDLE----------------QAVAILEG
        MVNL    V+   ICP C+   E   H   +C  + ++W+    S +        +   I++R M + R    + +                +A A  E 
Subjt:  MVNLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNE----FESMEIKDRWMFMSRLNGPDLE----------------QAVAILEG

Query:  LRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQNLWL
        + +AK +G S + V  DS T+I     + + +S ++T + +IH+   SF+ + F FV R  N  +H +A +     + ++L
Subjt:  LRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQNLWL

XP_012459052.1 PREDICTED: uncharacterized protein LOC105779706 [Gossypium raimondii]1.1e-0729.22Show/hide
Query:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPD---LEQAVAILEGLRLAKLLGVSKVSVMSDSM
        NL    +    +CP+CKE+ ETT H+L  C   R++W             S++++   +  S + G D   + +A+A      LAKL G  ++ V  DS+
Subjt:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPD---LEQAVAILEGLRLAKLLGVSKVSVMSDSM

Query:  TLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGR
        T+IK +    +  S I + + +IH +   F++V + FV+R  N  +H +   GR
Subjt:  TLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGR

XP_016706908.2 uncharacterized protein LOC107921587 [Gossypium hirsutum]3.0e-0828.25Show/hide
Query:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVG--NEFESMEIKDR----------WMFMSRLNGPDLEQAVAILEGLRLAKLLGVS
        NL    +    +CP+CKE+ ETT H+L  C   R++W +    V    N F ++ I  R             +  ++   + +A A    L LAKL G  
Subjt:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVG--NEFESMEIKDR----------WMFMSRLNGPDLEQAVAILEGLRLAKLLGVS

Query:  KVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NLWLGNYPQ
        ++ V  DS+T+IK +    +  S I + + +IH +   F++V + FV+R  N  +H +A  GR       W+   P+
Subjt:  KVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NLWLGNYPQ

TrEMBL top hitse value%identityAlignment
A0A1U8L0N0 uncharacterized protein LOC1079215871.4e-0828.25Show/hide
Query:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVG--NEFESMEIKDR----------WMFMSRLNGPDLEQAVAILEGLRLAKLLGVS
        NL    +    +CP+CKE+ ETT H+L  C   R++W +    V    N F ++ I  R             +  ++   + +A A    L LAKL G  
Subjt:  NLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVG--NEFESMEIKDR----------WMFMSRLNGPDLEQAVAILEGLRLAKLLGVS

Query:  KVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NLWLGNYPQ
        ++ V  DS+T+IK +    +  S I + + +IH +   F++V + FV+R  N  +H +A  GR       W+   P+
Subjt:  KVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NLWLGNYPQ

A0A5B6W0J8 Ribonuclease H-like superfamily protein3.8e-0923.96Show/hide
Query:  WNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETF----------------FPSVV----------------------------GNEFESMEIKDRW
        +   + V+ ICP+CK++ E+TDH+L+ CG  R VW                   F  V                             G +F+  E+ + +
Subjt:  WNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETF----------------FPSVV----------------------------GNEFESMEIKDRW

Query:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NL
        +F + +  P + +A A    L  AK +G  ++ V  D++++IK+IK +    S I +    I+ +G SF+++V++F  R  N  +H     GR +     
Subjt:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQ-NL

Query:  WLGNYPQWMVSLSICEQ
        W    P  ++S++  E+
Subjt:  WLGNYPQWMVSLSICEQ

A0A6P6UZA6 uncharacterized protein LOC1137160631.0e-0627.48Show/hide
Query:  VVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFS
        ++   ++ + ++ +     R     +E+A+AI   L +AK  G  K+ V SD  ++++ I    + E NI T L D+  +   F++  F F+SR  NV S
Subjt:  VVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFS

Query:  HKMAKVGRSSSQNL-WLGNYPQWMVSLSICE
        H +A        N+ W  ++P W++ L + E
Subjt:  HKMAKVGRSSSQNL-WLGNYPQWMVSLSICE

A0A7J9IWH7 Uncharacterized protein4.6e-0726.9Show/hide
Query:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEI---KDRWMFMSRLNGPD-LEQAVAILEGLRLAK----LLGVSKVSVM
        L+N  +    ICP C  E ET  HV+  C + ++VWE  + +      E   I   +     +S L   D L++ +  +  + + +      G +KV V 
Subjt:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEI---KDRWMFMSRLNGPD-LEQAVAILEGLRLAK----LLGVSKVSVM

Query:  SDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQN-LWLGNYP
         DS T I+ I  +    +++ + + DI  IG +F ++ F    R+ N  +H +A+ G S S+N  W+ + P
Subjt:  SDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQN-LWLGNYP

M8AL73 Calcium/calmodulin-dependent serine/threonine-protein kinase 11.9e-0826.01Show/hide
Query:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIK
        L +HH+    ICPVC+   E   H+LF C R++ VWE            S E    W         ++ +A+A+L+GLRLA  LG+S + V SDS+ +++
Subjt:  LWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIK

Query:  TIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG-RSSSQNLWLGNYPQWMVSLSICE
         I       ++      D   +  +F +      +R+ N   H++A+   R      W    P +++   + +
Subjt:  TIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG-RSSSQNLWLGNYPQWMVSLSICE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein8.1e-0428.57Show/hide
Query:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG--------
        M ++  + P   +  A+L  L+   + G ++V +  D  TLI  I G +   S++   L DI      F  + F F+ RK N  +H +AK G        
Subjt:  MFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVG--------

Query:  RSSSQNLWLGNY
         S S  +WL  Y
Subjt:  RSSSQNLWLGNY

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.7e-0431.71Show/hide
Query:  PDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAK
        P + +A+A+   L+ A+ +G++K+S+ SDS  LI  I  E    +     ++DI  +   F  V F+FV R  N  + ++AK
Subjt:  PDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQGESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAATCTATGGAATCATCATGTCCTGGTCAATGAGATTTGTCCAGTATGTAAAGAGGAGAATGAAACTACGGATCACGTCCTCTTCCAGTGTGGAAGAGCTCGGGA
TGTTTGGGAGACCTTTTTCCCATCGGTGGTCGGGAATGAGTTTGAATCTATGGAGATTAAAGATAGATGGATGTTTATGAGCAGGCTAAACGGGCCAGACTTAGAACAAG
CAGTTGCAATCCTTGAAGGGCTTCGTTTGGCCAAGCTTTTGGGAGTGAGTAAGGTTTCGGTAATGTCAGATTCCATGACATTGATCAAGACAATAAAAGGGGAGATGCAG
GGTGAATCTAACATTACTACAACGCTTTGGGATATCCATGCTATTGGAGCCTCCTTTGAAAAGGTGGTGTTTAATTTCGTTAGTCGTAAGTACAATGTTTTTTCCCATAA
GATGGCCAAAGTAGGTCGTTCGTCGTCGCAAAATTTGTGGCTAGGGAACTATCCTCAATGGATGGTTAGTTTATCGATTTGTGAGCAAAGTATGTTTGTATCCCTGCAGG
GCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAATCTATGGAATCATCATGTCCTGGTCAATGAGATTTGTCCAGTATGTAAAGAGGAGAATGAAACTACGGATCACGTCCTCTTCCAGTGTGGAAGAGCTCGGGA
TGTTTGGGAGACCTTTTTCCCATCGGTGGTCGGGAATGAGTTTGAATCTATGGAGATTAAAGATAGATGGATGTTTATGAGCAGGCTAAACGGGCCAGACTTAGAACAAG
CAGTTGCAATCCTTGAAGGGCTTCGTTTGGCCAAGCTTTTGGGAGTGAGTAAGGTTTCGGTAATGTCAGATTCCATGACATTGATCAAGACAATAAAAGGGGAGATGCAG
GGTGAATCTAACATTACTACAACGCTTTGGGATATCCATGCTATTGGAGCCTCCTTTGAAAAGGTGGTGTTTAATTTCGTTAGTCGTAAGTACAATGTTTTTTCCCATAA
GATGGCCAAAGTAGGTCGTTCGTCGTCGCAAAATTTGTGGCTAGGGAACTATCCTCAATGGATGGTTAGTTTATCGATTTGTGAGCAAAGTATGTTTGTATCCCTGCAGG
GCTAA
Protein sequenceShow/hide protein sequence
MVNLWNHHVLVNEICPVCKEENETTDHVLFQCGRARDVWETFFPSVVGNEFESMEIKDRWMFMSRLNGPDLEQAVAILEGLRLAKLLGVSKVSVMSDSMTLIKTIKGEMQ
GESNITTTLWDIHAIGASFEKVVFNFVSRKYNVFSHKMAKVGRSSSQNLWLGNYPQWMVSLSICEQSMFVSLQG