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Lag0026694 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026694
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:40666135..40666557
RNA-Seq ExpressionLag0026694
SyntenyLag0026694
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143319.1 uncharacterized protein LOC111013220 [Momordica charantia]1.0e-2141.18Show/hide
Query:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK
        DRLIW+FEKNG+ +VKS Y+LAH        S+S S     WW  +W++N+P+K+K+F WR   +RLPT  NLI RG+ V +    C    ED +H+FW 
Subjt:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK

Query:  CPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL
        C V ++    SKF+ +      L+   LL + +G L
Subjt:  CPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.2e-2951.26Show/hide
Query:  EDRLIWHFEKNGLFSVKSGYRLA--HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHV
        EDRLIW++EK G++SV+SGY++A  +N  +Q  PSSS S +   WW+G WKM+IPNK+K+FLWRL  +RLPT  NL KRG+ ++N C  C  + ED +H+
Subjt:  EDRLIWHFEKNGLFSVKSGYRLA--HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHV

Query:  FWKCPVVESSWLGSKFARM
        FW C   E+ W+ SKF ++
Subjt:  FWKCPVVESSWLGSKFARM

XP_023899813.1 uncharacterized protein LOC112011695 [Quercus suber]1.0e-2138.81Show/hide
Query:  DRLIWHFEKNGLFSVKSGYRLAHN--LRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVF
        D+LIW   +NG F+V+S Y LA N    I G  SS+ ST  C +W+ +W + +P+K++ F WR+ H+ LPTK NL++R ++  +LC  C+ + E   HV 
Subjt:  DRLIWHFEKNGLFSVKSGYRLAHN--LRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVF

Query:  WKCPVVESSWLGSKFARMYLSAVSLNFESLLWEI
        W CP  + +W  SK         +L F+ L+WE+
Subjt:  WKCPVVESSWLGSKFARMYLSAVSLNFESLLWEI

XP_023909336.1 uncharacterized protein LOC112020997 [Quercus suber]1.8e-2138.28Show/hide
Query:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK
        D  IW   KNG++S KS YRL     I  +P +S  +    +W+ +WK+NIPNKVK FLWR   + LPTK NL++R ++ +  C +C+   ED +H  W 
Subjt:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK

Query:  CPVVESSWLGSKFARMYLSAVSLNFESL
        C  V+  W   +  + +L    +NF+ L
Subjt:  CPVVESSWLGSKFARMYLSAVSLNFESL

XP_039834390.1 uncharacterized protein LOC120695147 [Panicum virgatum]3.6e-2249.14Show/hide
Query:  MEDRLIWHFEKNGLFSVKSGYRLAHNLR--IQGRPSSSESTQWCG----WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHE
        MEDR  WHF+K GLFSVKS Y+LA   R    GR ++S  +   G     W  +W M +PNKVK+F+WRL HN L  + NL++RGM V  LC MCQ   E
Subjt:  MEDRLIWHFEKNGLFSVKSGYRLAHNLR--IQGRPSSSESTQWCG----WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHE

Query:  DCVHVFWKCPVVESSW
        D  H+F+KC  V+  W
Subjt:  DCVHVFWKCPVVESSW

TrEMBL top hitse value%identityAlignment
A0A6J1CNZ5 uncharacterized protein LOC1110132205.1e-2241.18Show/hide
Query:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK
        DRLIW+FEKNG+ +VKS Y+LAH        S+S S     WW  +W++N+P+K+K+F WR   +RLPT  NLI RG+ V +    C    ED +H+FW 
Subjt:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK

Query:  CPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL
        C V ++    SKF+ +      L+   LL + +G L
Subjt:  CPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL

A0A6J1DAR4 uncharacterized protein LOC1110189542.5e-2951.26Show/hide
Query:  EDRLIWHFEKNGLFSVKSGYRLA--HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHV
        EDRLIW++EK G++SV+SGY++A  +N  +Q  PSSS S +   WW+G WKM+IPNK+K+FLWRL  +RLPT  NL KRG+ ++N C  C  + ED +H+
Subjt:  EDRLIWHFEKNGLFSVKSGYRLA--HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHV

Query:  FWKCPVVESSWLGSKFARM
        FW C   E+ W+ SKF ++
Subjt:  FWKCPVVESSWLGSKFARM

A0A7J6GNP7 zf-RVT domain-containing protein3.3e-2142.34Show/hide
Query:  MEDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSH-EDCVHV
        +ED+++WH+ KNG +SV +GYRLA +L  +   S S++++  GWW+GLWK  IP KVK F+W++ H+ +PTK +L  RGM +   C  C   + ED  H 
Subjt:  MEDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSH-EDCVHV

Query:  FWKCPVVESSW
         W C      W
Subjt:  FWKCPVVESSW

A0A803NIX4 Uncharacterized protein1.7e-2237.41Show/hide
Query:  EDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSS--HEDCVHV
        EDRLIWHF KNG ++V+SGY  A N R+      +EST+   WW  +W + +P KVK FLW++SH  LPT   L  R M V   C  C+ +   E  +H 
Subjt:  EDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSS--HEDCVHV

Query:  FWKCPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL
         W+CP+ + +W   +  +   + ++ + ++ LW +K +L
Subjt:  FWKCPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL

A0A803PTB0 Uncharacterized protein3.9e-2238.13Show/hide
Query:  EDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSS--HEDCVHV
        EDRLIWHF KNG ++V+SGY  A N R+    S +E+T+   WW  +W + IP KVK FLW++SH  L T   L  R M V   C  C+ +   E  +H 
Subjt:  EDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSS--HEDCVHV

Query:  FWKCPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL
         W+CP+ + +W      +   + ++L+ ++ LW +K +L
Subjt:  FWKCPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657507.8e-1231.19Show/hide
Query:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK
        DRL W F ++G FSV+S Y +   L +   P  + ++    +++ LWK+ +P +VK FLW + +  + T++   +R +  SN+C +C+   E  +HV   
Subjt:  DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWK

Query:  CPVVESSWL
        CP     W+
Subjt:  CPVVESSWL

Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.5e-0731.34Show/hide
Query:  WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW
        W+  +W  N   K     W ++ NRL T+D L   G+ +  +C++C S  E   H+F++CP   + W
Subjt:  WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.2e-0531.88Show/hide
Query:  WWSGLW-KMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWL
        W+  +W K  IP K     W    +RL TKD +I  G +   LC+ C +  E   H+F+ C      W+
Subjt:  WWSGLW-KMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWL

AT2G02650.1 Ribonuclease H-like superfamily protein1.6e-0730Show/hide
Query:  VKSGYRLA------HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW
        ++SGY +A          IQ  P S+E  Q       +WK+++  K+K FLWR     L T   L  R +    +C  C    E   H+ + CP  +S W
Subjt:  VKSGYRLA------HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW

AT3G25270.1 Ribonuclease H-like superfamily protein3.8e-0629.27Show/hide
Query:  LWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYLSAVSLNFES
        +WK+    K+K FLW+L    L T DNL +R +     C  C    E   H+F+ C   +  W  S      L    +  E+
Subjt:  LWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYLSAVSLNFES

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.6e-0628.12Show/hide
Query:  WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVE
        W   +W + I  K+KL +W+  +N LP    L+ R + +   C  C+   E   H+ + CP  +
Subjt:  WWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATCGTCTGATCTGGCATTTCGAGAAGAATGGGCTCTTTTCTGTGAAGAGTGGCTATCGTTTGGCACATAACTTGAGAATTCAGGGGCGCCCATCGTCTTCAGA
GTCGACCCAATGGTGTGGTTGGTGGTCGGGTTTGTGGAAGATGAATATCCCCAACAAAGTTAAACTCTTTCTATGGAGATTGTCGCACAATCGACTGCCTACCAAGGATA
ATTTGATCAAAAGAGGTATGGTTGTCTCAAACTTGTGTGTGATGTGTCAGTCCTCTCATGAAGATTGTGTACATGTGTTCTGGAAGTGTCCTGTTGTTGAGTCTTCGTGG
TTGGGCTCTAAGTTTGCTCGTATGTATCTGTCTGCTGTGAGTCTGAATTTTGAGTCTCTGTTATGGGAGATTAAGGGCAGGTTGTGTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATCGTCTGATCTGGCATTTCGAGAAGAATGGGCTCTTTTCTGTGAAGAGTGGCTATCGTTTGGCACATAACTTGAGAATTCAGGGGCGCCCATCGTCTTCAGA
GTCGACCCAATGGTGTGGTTGGTGGTCGGGTTTGTGGAAGATGAATATCCCCAACAAAGTTAAACTCTTTCTATGGAGATTGTCGCACAATCGACTGCCTACCAAGGATA
ATTTGATCAAAAGAGGTATGGTTGTCTCAAACTTGTGTGTGATGTGTCAGTCCTCTCATGAAGATTGTGTACATGTGTTCTGGAAGTGTCCTGTTGTTGAGTCTTCGTGG
TTGGGCTCTAAGTTTGCTCGTATGTATCTGTCTGCTGTGAGTCTGAATTTTGAGTCTCTGTTATGGGAGATTAAGGGCAGGTTGTGTGCATAG
Protein sequenceShow/hide protein sequence
MEDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW
LGSKFARMYLSAVSLNFESLLWEIKGRLCA