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Lag0026713 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026713
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:40853211..40857281
RNA-Seq ExpressionLag0026713
SyntenyLag0026713
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAK01363.1 LOW QUALITY PROTEIN: ribonuclease HI-related protein 3 [Geomicrobium sp. JCM 19055]6.9e-0858Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
        M   K+YVV+ GR PGIYT W EC  +V  FKGA  KSYPT++EA+ AF+
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
RYR74402.1 hypothetical protein Ahy_A02g009104 [Arachis hypogaea]1.1e-1055Show/hide
Query:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVD
        K+YVVF+GR PGIY+ W  CH QVN+F G LHKSY TF EA  AF Q+++  R +  L +
Subjt:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVD
WP_138789662.1 ribonuclease H family protein [Paenibacillus thermoaerophilus]1.8e-0854.24Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGE
        M  TK+YVV+VGR PGIYT W EC  QV++F+GA  KSY +  EAE AF+   +G  G+
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGE
WP_138879431.1 ribonuclease H family protein [Paenibacillus mesophilus]1.4e-0854.1Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
        M  TK+YVV+VGR PGIYT W EC +QVNQF+GA  KS+ T  EAE A+    + + G+A+
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
WP_150456826.1 ribonuclease H family protein [Paenibacillus spiritus]1.4e-0854.1Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
        M  TK+YVV+VGR PGIY  W EC RQ +QF GA +KSY + QEAE A+R    G  G+ +
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
TrEMBL top hitse value%identityAlignment
A0A061N9J9 Ribonuclease H3.3e-0858Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
        M   K+YVV+ GR PGIYT W EC  +V  FKGA  KSYPT++EA+ AF+
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
A0A061P172 Ribonuclease H4.4e-0858Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
        M   K+YVV+ GR PGIYT W EC  +V  FKGA  KSYPT++EA+ AF+
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFR
A0A445EFW3 Cauli_VI domain-containing protein5.5e-1155Show/hide
Query:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVD
        K+YVVF+GR PGIY+ W  CH QVN+F G LHKSY TF EA  AF Q+++  R +  L +
Subjt:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVD
A0A5J5GH46 Ribonuclease H6.7e-0954.1Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
        M  TK+YVV+VGR PGIY  W EC RQ +QF GA +KSY + QEAE A+R    G  G+ +
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEAN
F3ZQE7 Ribonuclease H5.7e-0857.78Show/hide
Query:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAF
        K+YVV+ G NPGIYT W +C  Q+N ++GAL+KS+PT ++AEYA+
Subjt:  KFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAF
SwissProt top hitse value%identityAlignment
Q04740 Ribonuclease H4.8e-0440Show/hide
Query:  RATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAE
        R   FY V  GR  GIY  W EC  QV+ + GA++K + ++++A+
Subjt:  RATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAE
Q07762 Ribonuclease H1.5e-0555Show/hide
Query:  FYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEA
        FYVV VGR  GIY+ W +C  QV  F GA++KS+ T  EA
Subjt:  FYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEA
Q9KEI9 Ribonuclease H2.9e-0942.17Show/hide
Query:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVDQHDVCRNL--PVGGYGTVG
        M  +K+YVV+ GR PGIYT W  C  QV  + GA  KSYP+ +EAE AFR    G      L  +  +  +L   VG  G  G
Subjt:  MRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVDQHDVCRNL--PVGGYGTVG
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATTGGTATCCGCCTAGTAGATTGGGGCACAGTGAGGGGTGGGACGAAGGTTTACTCCAAAGAACACCGTTATA
TTCGAGGACTATGAGGGCAACAAAATTCTATGTCGTTTTTGTTGGTCGCAACCCAGGAATTTACACCTTGTGGGTTGAATGCCACAGACAAGTAAACCAGTTTAAGGGAG
CACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCAGTACGTTGCGGGCACCCGGGGCGAAGCAAACCTCGTTGACCAACATGATGTGTGTCGT
AACCTTCCTGTAGGGGGCTATGGAACCGTAGGAAAATGTTACAGTATTAGTCGGATGTTTGTAGGGTTCCTGTTCGGAATAATTGTAACTTACGTCATCGTTCACTATCT
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATTGGTATCCGCCTAGTAGATTGGGGCACAGTGAGGGGTGGGACGAAGGTTTACTCCAAAGAACACCGTTATA
TTCGAGGACTATGAGGGCAACAAAATTCTATGTCGTTTTTGTTGGTCGCAACCCAGGAATTTACACCTTGTGGGTTGAATGCCACAGACAAGTAAACCAGTTTAAGGGAG
CACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCAGTACGTTGCGGGCACCCGGGGCGAAGCAAACCTCGTTGACCAACATGATGTGTGTCGT
AACCTTCCTGTAGGGGGCTATGGAACCGTAGGAAAATGTTACAGTATTAGTCGGATGTTTGTAGGGTTCCTGTTCGGAATAATTGTAACTTACGTCATCGTTCACTATCT
TTAG
Protein sequenceShow/hide protein sequence
MPLQLVVGVDDMNWYPPSRLGHSEGWDEGLLQRTPLYSRTMRATKFYVVFVGRNPGIYTLWVECHRQVNQFKGALHKSYPTFQEAEYAFRQYVAGTRGEANLVDQHDVCR
NLPVGGYGTVGKCYSISRMFVGFLFGIIVTYVIVHYL