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Lag0026788 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026788
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:41877538..41879709
RNA-Seq ExpressionLag0026788
SyntenyLag0026788
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF28878.1 conserved hypothetical protein [Ricinus communis]7.1e-0936.63Show/hide
Query:  GVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDRVWLEEGPSEISDVLRGDAV
        G+ LA+  GF    VE+D+   + +L G  ++ +E+G ++DD++ +    D + +V+S   R  N+VAH +ASL  S  DRVW+E  P++ S++L  DA+
Subjt:  GVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDRVWLEEGPSEISDVLRGDAV

Query:  S
        S
Subjt:  S

ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]1.6e-0837.89Show/hide
Query:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNN-KVVFSPRQGNRVAHALASLAF-SYVDRVWLEEGPSEIS
        ++ G+QL   +G A  ++E+DS  +V +++  +    EVG L+ DV+ VL   +++ +V F+PR  N VAH L+ LA  + +++VWLEE P+EI+
Subjt:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNN-KVVFSPRQGNRVAHALASLAF-SYVDRVWLEEGPSEIS

KAF7845245.1 transcription factor SCREAM2-like isoform X1 [Senna tora]1.2e-0835.35Show/hide
Query:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSY-VDRVWLEEGPSEISDVLRGDA
        +G++LA+ L   + ++E D+ ++  ++HG  Q++S +G L+DD+R  +  +   KV + PR  N VA  +A+ A +    +VWLE+ P  ISDVL  D+
Subjt:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSY-VDRVWLEEGPSEISDVLRGDA

OMO77333.1 hypothetical protein CCACVL1_15074 [Corchorus capsularis]1.6e-0836Show/hide
Query:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDR-VWLEEGPSEISDVLRGD
        K ++ ++ +GF D ++E D+L ++K L   +QD+S +G  +++++  LH    N   FS   R GN  AHALAS  FS  +  +W+EE P+ + DVL+ +
Subjt:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDR-VWLEEGPSEISDVLRGD

XP_023923041.1 uncharacterized protein LOC112034451 [Quercus suber]1.9e-0939.22Show/hide
Query:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSYVD-RVWLEEGPSEISDVLRGDAV
        K   LAR LGF + ++E DSL L+K L     ++S +G L+DDV+ V   ++        R GN VAH+LA  A    D +VW+E+ PS I+ +L  D +
Subjt:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSYVD-RVWLEEGPSEISDVLRGDAV

Query:  SS
         S
Subjt:  SS

TrEMBL top hitse value%identityAlignment
A0A1R3HHY9 Reverse transcriptase1.7e-0835.71Show/hide
Query:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSYV-DRVWLEEGPSEISDVLRGD
        K +  AR++GF D +VE D+L ++K ++  ++D+S +G   ++++     +++       R GN VAHALA+   S   D VW+EE P  I DVL+ D
Subjt:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSYV-DRVWLEEGPSEISDVLRGD

A0A1R3I426 Uncharacterized protein7.7e-0936Show/hide
Query:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDR-VWLEEGPSEISDVLRGD
        K ++ ++ +GF D ++E D+L ++K L   +QD+S +G  +++++  LH    N   FS   R GN  AHALAS  FS  +  +W+EE P+ + DVL+ +
Subjt:  KGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDR-VWLEEGPSEISDVLRGD

A0A6J1DBJ7 uncharacterized protein LOC1110189731.0e-0840.38Show/hide
Query:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPW-DNNKVVFSPRQGNRVAHALASLAFSYVD-RVWLEEGPSEISDVLRG
        +Y+G+ LA + GF  F +ETDSLR+  +L     D SEVG L   +++ L    +     F+ R GN  AH LA LA +    ++W+EE P EIS VL  
Subjt:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPW-DNNKVVFSPRQGNRVAHALASLAFSYVD-RVWLEEGPSEISDVLRG

Query:  DAVS
        D  S
Subjt:  DAVS

B9T5J0 RNase H domain-containing protein3.5e-0936.63Show/hide
Query:  GVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDRVWLEEGPSEISDVLRGDAV
        G+ LA+  GF    VE+D+   + +L G  ++ +E+G ++DD++ +    D + +V+S   R  N+VAH +ASL  S  DRVW+E  P++ S++L  DA+
Subjt:  GVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFS--PRQGNRVAHALASLAFSYVDRVWLEEGPSEISDVLRGDAV

Query:  S
        S
Subjt:  S

V4UMR3 RNase H domain-containing protein (Fragment)7.7e-0937.89Show/hide
Query:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNN-KVVFSPRQGNRVAHALASLAF-SYVDRVWLEEGPSEIS
        ++ G+QL   +G A  ++E+DS  +V +++  +    EVG L+ DV+ VL   +++ +V F+PR  N VAH L+ LA  + +++VWLEE P+EI+
Subjt:  MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNN-KVVFSPRQGNRVAHALASLAF-SYVDRVWLEEGPSEIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAAAGGGGTCCAGCTTGCTCGGCAGTTGGGGTTTGCTGATTTTGTGGTGGAGACCGACTCTCTGAGACTGGTCAAAATCCTTCATGGTGGTATGCAGGATGTGTC
GGAGGTAGGGCGGTTGATGGATGATGTGCGAATGGTCCTCCATCCTTGGGACAACAACAAGGTTGTGTTTTCGCCTCGTCAGGGAAACAGGGTGGCGCATGCTCTGGCTA
GCTTGGCCTTTTCTTATGTTGACCGTGTTTGGCTTGAAGAAGGGCCTAGCGAGATTTCTGATGTCCTGAGGGGTGATGCTGTTTCATCTTTTTGTGCTGTCCTTTTGCCT
GGGATTGAGGGGGAAGATGGGTGGAGGGGGCTTATAAATCCTACCAGGTATGCTTCTCCTAGGCAAACGCGTAGCATTTGGTGTGCAGAGTACTGTTATGATAAGTTTCC
ATCTTCTAGACCTGCTTTCAGGGCCCATTACTCTGCTTGTGTTGGTGGGGGATTGCAAAAGGCTTGCTCCCTCCTTCATGTTGTTTTGAGCGGGCCTGTGGGAGGTCCAA
GGCGCCTGCCAGTTGATGCTGCCAATATCCTGTGGTGTGTTTCTTCCAATGGTTTGGTTAGGCCGTTTTGTTTTTGGGACCTGCTGTGGGGGTGGAGGCATCAATTTTGT
TTAGGCTGCATGGGCGTGAAGCAACGGCGTTGGTGTGGTGACAGGCTGACCAAAGTATGGCGATGTCTTTGTCGTTTCCTTGTGAAGTACTGGAGAGGCTTGTGTTCATG
GTTTGCGGTGCTTGATGGTGAATATGATGACAACGAGCTGCGACAGGGGATTCCATTGGGTGTTTGCTTAGTTTGGTTCTTATTCGTGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAAAGGGGTCCAGCTTGCTCGGCAGTTGGGGTTTGCTGATTTTGTGGTGGAGACCGACTCTCTGAGACTGGTCAAAATCCTTCATGGTGGTATGCAGGATGTGTC
GGAGGTAGGGCGGTTGATGGATGATGTGCGAATGGTCCTCCATCCTTGGGACAACAACAAGGTTGTGTTTTCGCCTCGTCAGGGAAACAGGGTGGCGCATGCTCTGGCTA
GCTTGGCCTTTTCTTATGTTGACCGTGTTTGGCTTGAAGAAGGGCCTAGCGAGATTTCTGATGTCCTGAGGGGTGATGCTGTTTCATCTTTTTGTGCTGTCCTTTTGCCT
GGGATTGAGGGGGAAGATGGGTGGAGGGGGCTTATAAATCCTACCAGGTATGCTTCTCCTAGGCAAACGCGTAGCATTTGGTGTGCAGAGTACTGTTATGATAAGTTTCC
ATCTTCTAGACCTGCTTTCAGGGCCCATTACTCTGCTTGTGTTGGTGGGGGATTGCAAAAGGCTTGCTCCCTCCTTCATGTTGTTTTGAGCGGGCCTGTGGGAGGTCCAA
GGCGCCTGCCAGTTGATGCTGCCAATATCCTGTGGTGTGTTTCTTCCAATGGTTTGGTTAGGCCGTTTTGTTTTTGGGACCTGCTGTGGGGGTGGAGGCATCAATTTTGT
TTAGGCTGCATGGGCGTGAAGCAACGGCGTTGGTGTGGTGACAGGCTGACCAAAGTATGGCGATGTCTTTGTCGTTTCCTTGTGAAGTACTGGAGAGGCTTGTGTTCATG
GTTTGCGGTGCTTGATGGTGAATATGATGACAACGAGCTGCGACAGGGGATTCCATTGGGTGTTTGCTTAGTTTGGTTCTTATTCGTGGGATGA
Protein sequenceShow/hide protein sequence
MYKGVQLARQLGFADFVVETDSLRLVKILHGGMQDVSEVGRLMDDVRMVLHPWDNNKVVFSPRQGNRVAHALASLAFSYVDRVWLEEGPSEISDVLRGDAVSSFCAVLLP
GIEGEDGWRGLINPTRYASPRQTRSIWCAEYCYDKFPSSRPAFRAHYSACVGGGLQKACSLLHVVLSGPVGGPRRLPVDAANILWCVSSNGLVRPFCFWDLLWGWRHQFC
LGCMGVKQRRWCGDRLTKVWRCLCRFLVKYWRGLCSWFAVLDGEYDDNELRQGIPLGVCLVWFLFVG