CuGenDBv2

Gene ID	Lag0026807
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	chr10:42186283..42193435
RNA-Seq Expression	Lag0026807
Synteny	Lag0026807
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008442914.1 PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]

1.4e-213

90.69

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRH QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP  KKPCFSHGV D+KQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSPG+LGATPADKA VIELIIPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYFLG Q K AL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFC SK S AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        ITSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

4.7e-222

94.03

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQ PAQG TATVSP T   HS+GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP QKKPCFSHGV D+KQEELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSP SL AT  DKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYF+GIQAK ALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKIS  VP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        +TSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

XP_023005694.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita maxima]

1.4e-221

93.79

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQ PAQG TATVSP T   HS+GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP QKKPCFSHGV D+KQEELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKEVPDLKIFTYERLDWLKQAS LPSQANENSIG LKEHNYHSPRMSP SL AT  DKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYF+GIQAK ALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKIS AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        +TSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

6.1e-222

94.03

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQ PAQG TATVSP T   HS+GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSN+EP QKKPCFSHGV D+KQEELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTC+EKEVPDLKIFTYERLDWLKQASAL SQANENSIGALKEHNYHSPRMSP SL AT  DKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYF+GIQAK ALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKIS AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        +TSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

1.4e-221

93.32

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQQPAQGQTATVSPNTAPPHS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DENGSN EP  KKPCFSHGV D+KQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLS+ILTCMEKEVP+LKIFTYERLDWLKQASALPSQANENSIG LKEH+YHSPRMSPGSLGATP DKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLG QAK AL+PLLLWICSYQNLFSKACSKCG+LLSVNKQSDLLLPPAVRPYKQFC SK S +VP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        ITSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

1.9e-213

90.93

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRH QQP+QGQTATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP  KKPCFSHGV D+KQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+CMEKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSPG+LGATPADKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYFLG Q K AL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPAVRPYKQFC SK S  VP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        ITSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

6.6e-214

90.69

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRH QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP  KKPCFSHGV D+KQ EL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+C+EKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSPG+LGATPADKA VIELIIPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSN+H+FRHVTEHAATVLQYFLG Q K AL+PLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFC SK S AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        ITSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

6.2e-212

89.5

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQQPAQGQTATVSPNTA PHS GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDE+  N+EP  KKPCFSHGV +IKQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        + R+LSDILTCMEKEVPDLKIFTYERLDWLKQA AL SQAN+NSIGALKEHNYHSPRM PGSL A+  DK +VIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FF+PDERGS+VHARGFS HHLFRHVTEHAATVLQYFLGIQ K AL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTS++  AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        I+SLKDQ+ D VQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

2.3e-222

94.03

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQ PAQG TATVSP T   HS+GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP QKKPCFSHGV D+KQEELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSP SL AT  DKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYF+GIQAK ALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKIS  VP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        +TSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

6.6e-222

93.79

Show/hide

Query:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR TQ PAQG TATVSP T   HS+GSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP QKKPCFSHGV D+KQEELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELN

Query:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKEVPDLKIFTYERLDWLKQAS LPSQANENSIG LKEHNYHSPRMSP SL AT  DKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP
        FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYF+GIQAK ALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKIS AVP
Subjt:  FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVP

Query:  ITSLKDQKLDSVQAFHIVC
        +TSLKDQKLDSVQAFHI C
Subjt:  ITSLKDQKLDSVQAFHIVC

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

4.7e-124

59.55

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Query:  NTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  +APPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELNDSRSLSDILTCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD  G  +EP  KK   SH + +  +EE  D ++L DI + +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELNDSRSLSDILTCMEKEVP

Query:  DLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS
         +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK AVIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Subjt:  DLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS

Query:  NHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVPITSLKDQKLDSVQAFHI
         +H+++H+TEHAAT LQYFLG     AL+ LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++     + LA+         LD  +A+H 
Subjt:  NHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVPITSLKDQKLDSVQAFHI

Query:  VCS
         CS
Subjt:  VCS

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

3.3e-125

59.55

Show/hide

Query:  NTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS
        N A   +  S  +APPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNS
Subjt:  NTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNS

Query:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELNDSRSLSDILTCMEKEVP
        WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD  G  +EP  KK   SH + +  +EE  D ++L DI + +EK VP
Subjt:  WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELNDSRSLSDILTCMEKEVP

Query:  DLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS
         +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L     DK AVIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Subjt:  DLKIFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS

Query:  NHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVPITSLKDQKLDSVQAFHI
         +H+++H+TEHAAT LQYFLG     AL+ LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++     + LA+         LD  +A+H 
Subjt:  NHHLFRHVTEHAATVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVPITSLKDQKLDSVQAFHI

Query:  VCS
         CS
Subjt:  VCS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACATACGCAGCAGCCTGCGCAGGGCCAGACTGCGACGGTGAGCCCCAACACTGCTCCGCCTCATTCTGCCGGCTCCGCGGAGGAGGCGCCGCCGAAGCAGGTAGC
ACTCGCCATGGACAGACTCGGCCACGCCGCCCGCCTCATCGCCGACATCAGGCTCGGCGCCGATCGCCTTCTCGAAGCCCTTTGCGTCACTGCTCAGCCTCACCAGAGCA
CCAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCCTCCATGCGTCAACACCTCCTTGACCTTCGTGCAGTTGGGAAGCAGCTTGAAGAGTCTGGTGTTCTCAGTGAATCT
CTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTTTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATC
CGCAGTTGATCGGACCAGGTTAGCTCTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGATGATGAAAATGGGTCAAATGTTGAGCCTGTTCAGAAGA
AGCCTTGTTTTTCTCATGGAGTGGCAGATATTAAACAAGAGGAGCTTAATGATTCTAGATCACTCTCAGATATTCTTACTTGTATGGAAAAGGAAGTGCCAGACCTTAAG
ATCTTCACTTATGAGCGATTGGACTGGTTGAAACAAGCTTCTGCACTTCCCTCACAAGCAAATGAGAATTCCATAGGAGCCTTGAAAGAACATAACTATCATAGTCCTAG
GATGAGCCCCGGATCACTAGGTGCTACTCCCGCAGATAAAGCTGCTGTGATTGAGTTGATCATCCCTTCTGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTG
TTGAACCAGATGCTGTAGCTTTCTTTTCTCCTGACGAGAGAGGCAGCCATGTACATGCCAGGGGGTTTTCAAATCATCATTTGTTTAGACACGTGACGGAGCATGCTGCC
ACTGTGCTGCAGTACTTTCTTGGAATTCAAGCAAAACCAGCTCTACATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGG
ACGGCTACTATCAGTAAACAAACAATCAGATTTACTGTTACCTCCTGCAGTTCGCCCTTACAAGCAGTTTTGTACATCAAAAATCTCATTAGCGGTGCCCATAACCTCAT
TGAAAGACCAGAAGTTGGATTCTGTTCAAGCTTTCCACATCGTGTGCAGTGTGCACCAGTTCCTCTTAATCCACGATTCCCTGCCTAAAGGCCTTGTGGACTCTGATTCA
CATGTTATAGGATATCGTGTTCTCTATGAATTAGTATGCTCAGAATCAGAAGATGCAGCCTGCTTGCTACCGTGTGCTCCTTTTGGTGATTCACTACCCTGTGCATTATG
TTTCATTTCAGCTCTTCCACGTAACTTCGCAGTCAATATATTATTATTTCAGTTAGCAGGAAAATTTGGAAACGACTCTCTTCCTGCAAGGGGGACCGGTTTGTTTGGAA
GGTTGAAGCAGCTTCTTGTTAAAAGATTCCAACTTTACTATAATTTCAACTTGCAGCAGCTCATTGTAGCTGCTGCTAGAATTGCTTTCTCAAGTGAGTTGCTGCAAGCA
ATCAATGTGTCCAAGTCCATCTCCAAACCAATATAA

mRNA sequence

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Protein sequence

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MRHTQQPAQGQTATVSPNTAPPHSAGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES
LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNVEPVQKKPCFSHGVADIKQEELNDSRSLSDILTCMEKEVPDLK
IFTYERLDWLKQASALPSQANENSIGALKEHNYHSPRMSPGSLGATPADKAAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFSNHHLFRHVTEHAA
TVLQYFLGIQAKPALHPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISLAVPITSLKDQKLDSVQAFHIVCSVHQFLLIHDSLPKGLVDSDS
HVIGYRVLYELVCSESEDAACLLPCAPFGDSLPCALCFISALPRNFAVNILLFQLAGKFGNDSLPARGTGLFGRLKQLLVKRFQLYYNFNLQQLIVAAARIAFSSELLQA
INVSKSISKPI

Lag0026807 (gene) of Sponge gourd (AG-4) v1 genome