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Lag0026813 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026813
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:42240661..42242407
RNA-Seq ExpressionLag0026813
SyntenyLag0026813
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1445.98Show/hide
Query:  GTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKENLFGVDLRETKSSKGVYKSWKSEYKDNSSWLRGRGRGR
        GT  K+G MA++ WIP++YEKLPDFCY CG++GHV  EC E+G +  +   FGV LR++++S+ + K  + E +   +  RGRG G+
Subjt:  GTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKENLFGVDLRETKSSKGVYKSWKSEYKDNSSWLRGRGRGR

XP_015619246.1 uncharacterized protein LOC107279669 [Oryza sativa Japonica Group]1.0e-0933.52Show/hide
Query:  LKTPSFGKYAKALGNVIGSEIAEHDDYDKME-----GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAET
        +K P  G   K  G  IG E+ E    D  E     G+ LR+KIRI++ + L RG  + +G+     W P+ YE LPDFCY CG +GH +  C +  AE 
Subjt:  LKTPSFGKYAKALGNVIGSEIAEHDDYDKME-----GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAET

Query:  SKENLFGVDLR---ETK------SSKGVYKSWKSEYKDNSSWLRGRGRGRWERNQRGDFSNQRKKGGMEEMEIIYP
         +  LF   LR   E K      S K     ++ + K  +S  +G     W R +  D S  ++KG   E E+  P
Subjt:  SKENLFGVDLR---ETK------SSKGVYKSWKSEYKDNSSWLRGRGRGRWERNQRGDFSNQRKKGGMEEMEIIYP

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]4.6e-1034.09Show/hide
Query:  KYAKALGNVIGSEIAEHDDYDKME---GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKEN-----
        K  + +GN IG  I E  D ++ E   GE LR+++R+N+ + L RG  VK+G      WI   YE+LP+FCY CGKLGH + +C   G + +++      
Subjt:  KYAKALGNVIGSEIAEHDDYDKME---GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKEN-----

Query:  ----LFGVDLRETKSSKGVYKSWKSEYKDNSS
              G  +   K + G  +S   E+   SS
Subjt:  ----LFGVDLRETKSSKGVYKSWKSEYKDNSS

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]2.7e-1038.74Show/hide
Query:  LKTPSFGKYAKALGNVIGSEIA-----EHDDYDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAET
        LK P  G   KA G  IG EI      + D+ D   G  LR+K+R+++ + L RG  V +G   +  W P+ YE LPDFCY CG +GH    C E+  E 
Subjt:  LKTPSFGKYAKALGNVIGSEIA-----EHDDYDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAET

Query:  SKENLFGVDLR
         +   F   LR
Subjt:  SKENLFGVDLR

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]3.7e-1237.68Show/hide
Query:  GKYAKALGNVIGSEIAEHDDYDK-----MEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC-NELGAETSKENL
        G   K +   IG E+ E  + D        G  LRVK+RI +E+ L+RG  + +G  A++ W PITYE LPDFCY CG++GH    C  +L A   ++  
Subjt:  GKYAKALGNVIGSEIAEHDDYDK-----MEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC-NELGAETSKENL

Query:  FGVDLRETKSSKGV-YKSWKSEYKDNSSWLRGRGRGRW
        FG +LR     K    +SW+S+    S   R  G G W
Subjt:  FGVDLRETKSSKGV-YKSWKSEYKDNSSWLRGRGRGRW

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein1.1e-1250Show/hide
Query:  KYAKALGNVIGS-EIAEHDDYDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC
        KY  AL N I S E  E  +  +  GE L+V+ +I++++SL   TN+K+G+MA++  IP+TYEKL DFCY CG LGHV  EC
Subjt:  KYAKALGNVIGS-EIAEHDDYDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC

A0A5D3C0K2 Reverse transcriptase3.3e-1445.98Show/hide
Query:  GTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKENLFGVDLRETKSSKGVYKSWKSEYKDNSSWLRGRGRGR
        GT  K+G MA++ WIP++YEKLPDFCY CG++GHV  EC E+G +  +   FGV LR++++S+ + K  + E +   +  RGRG G+
Subjt:  GTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKENLFGVDLRETKSSKGVYKSWKSEYKDNSSWLRGRGRGR

A0A6P9EID8 uncharacterized protein LOC1183488562.2e-1034.09Show/hide
Query:  KYAKALGNVIGSEIAEHDDYDKME---GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKEN-----
        K  + +GN IG  I E  D ++ E   GE LR+++R+N+ + L RG  VK+G      WI   YE+LP+FCY CGKLGH + +C   G + +++      
Subjt:  KYAKALGNVIGSEIAEHDDYDKME---GETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAETSKEN-----

Query:  ----LFGVDLRETKSSKGVYKSWKSEYKDNSS
              G  +   K + G  +S   E+   SS
Subjt:  ----LFGVDLRETKSSKGVYKSWKSEYKDNSS

A0A803M277 Uncharacterized protein9.9e-1143.18Show/hide
Query:  KYAKALGNVIGSEIAEHDDYDKMEGET-LRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAE
        ++AK +G+ +G  I E DD D +  E  LR+K+ I++E++L+RG  + +G  A K W+   YE+L DFCYYCG+LGH   EC+ +  E
Subjt:  KYAKALGNVIGSEIAEHDDYDKMEGET-LRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMECNELGAE

A0A803NW03 Uncharacterized protein2.9e-1029.03Show/hide
Query:  AKALGNVIGSEIAEHDD-YDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC----NELGAETSKENLFGVD
        AKALGN+IG  +  H+D  ++  G  LR ++++N+ + L RG N+++    +K W+   YE+LP++C  CG+LGH   +C     ++      E  +G +
Subjt:  AKALGNVIGSEIAEHDD-YDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCGKLGHVKMEC----NELGAETSKENLFGVD

Query:  LRETKSSKGVYKSWKSEYKDNSSW
        L+        Y  +++++   ++W
Subjt:  LRETKSSKGVYKSWKSEYKDNSSW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATGCACTTGCGAGGAACGAAACCCTAACGCTGTGGAAATATGCGACGTGAGGACTGGACTGGACTGGAAATATGTGAGGAACGAAACCCTAAAAACACCATCGTT
CGGGAAATATGCGAAGGCCCTGGGGAATGTCATAGGTAGCGAAATAGCAGAACATGATGATTACGACAAGATGGAAGGGGAAACTCTTCGGGTCAAAATAAGGATTAACA
TGGAGGAATCGTTGAAGAGAGGAACAAACGTTAAAATAGGGTCCATGGCTGAGAAAACATGGATCCCTATAACTTACGAGAAATTGCCCGACTTTTGCTATTATTGTGGG
AAACTTGGTCACGTTAAAATGGAGTGCAACGAATTAGGAGCAGAAACCAGCAAAGAAAATTTATTTGGAGTGGATCTGCGAGAAACCAAGAGCAGTAAAGGGGTTTACAA
AAGTTGGAAATCCGAATACAAGGACAACAGTAGTTGGCTCAGAGGTAGAGGCAGGGGTAGATGGGAAAGAAACCAAAGAGGAGATTTCAGCAACCAAAGAAAGAAAGGAG
GGATGGAAGAGATGGAAATTATCTACCCTCACAATAACAGAAGAGAAACCATCTCCAAGGAAGATAGAAGAATCGAAAAAGAAAGATGGAGGGAAGAAAGGTCTGAAGAA
AATAGAGACTGTATAAGAAGACAGGAGAGTCAAGAAAAAAGTGATTATGACCAGAGAGGGTCGAATAAGGAAGAAAGGCCCCCGACGGCAACCATCGACGTCCAAGGGAT
CAGTTCTCCGGCGGATCTTCCTTCGAGGACGAATGCTATAGCCCAAACGGTCACTGACAAAGTTGGTGAAGGAACCGAAAAAAAGAAAGATGATAACCAGGCTACCGACA
AGGAAAAGTCAAATCACGTGGAAAAAGGCAAAAGTATAGCTTCTGGAGAGAATAGAAAAAGCCCAAAGTCAAGCCCAAAAGTTATTAAGTTGGGCTCATCAAAAGAAAAG
CAAATGGAGGCTAGTAAATATGCTGAGATGGAAAGAAATCTTGAAGATATAGGCTATGAAGCACGGACACGCCAAAATGGGTGGAGGATCTGTGTTGGACACGTGTCGGA
CACGGATTCGTCCGGACACGCTCCGGACACGTGTCCGACACGCAGTTTTGCGTGTCCTATTTTATTTATTTATTTTTTTAATTTCGGACACGCGGGGACACGGCTAGATA
CGTCCACGGACACGCTGAGTCTGAGAGAGAGAGAGAGAGAGCAAAAACCTCAAATGTCGCTGCACTTCATCGCTGCTAGTTTATCTCAAATGCTGCTGCACTTCATCGCT
GCTAGTTTATCTCAAATGCTGCTGCAATATCACTTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGATGCACTTGCGAGGAACGAAACCCTAACGCTGTGGAAATATGCGACGTGAGGACTGGACTGGACTGGAAATATGTGAGGAACGAAACCCTAAAAACACCATCGTT
CGGGAAATATGCGAAGGCCCTGGGGAATGTCATAGGTAGCGAAATAGCAGAACATGATGATTACGACAAGATGGAAGGGGAAACTCTTCGGGTCAAAATAAGGATTAACA
TGGAGGAATCGTTGAAGAGAGGAACAAACGTTAAAATAGGGTCCATGGCTGAGAAAACATGGATCCCTATAACTTACGAGAAATTGCCCGACTTTTGCTATTATTGTGGG
AAACTTGGTCACGTTAAAATGGAGTGCAACGAATTAGGAGCAGAAACCAGCAAAGAAAATTTATTTGGAGTGGATCTGCGAGAAACCAAGAGCAGTAAAGGGGTTTACAA
AAGTTGGAAATCCGAATACAAGGACAACAGTAGTTGGCTCAGAGGTAGAGGCAGGGGTAGATGGGAAAGAAACCAAAGAGGAGATTTCAGCAACCAAAGAAAGAAAGGAG
GGATGGAAGAGATGGAAATTATCTACCCTCACAATAACAGAAGAGAAACCATCTCCAAGGAAGATAGAAGAATCGAAAAAGAAAGATGGAGGGAAGAAAGGTCTGAAGAA
AATAGAGACTGTATAAGAAGACAGGAGAGTCAAGAAAAAAGTGATTATGACCAGAGAGGGTCGAATAAGGAAGAAAGGCCCCCGACGGCAACCATCGACGTCCAAGGGAT
CAGTTCTCCGGCGGATCTTCCTTCGAGGACGAATGCTATAGCCCAAACGGTCACTGACAAAGTTGGTGAAGGAACCGAAAAAAAGAAAGATGATAACCAGGCTACCGACA
AGGAAAAGTCAAATCACGTGGAAAAAGGCAAAAGTATAGCTTCTGGAGAGAATAGAAAAAGCCCAAAGTCAAGCCCAAAAGTTATTAAGTTGGGCTCATCAAAAGAAAAG
CAAATGGAGGCTAGTAAATATGCTGAGATGGAAAGAAATCTTGAAGATATAGGCTATGAAGCACGGACACGCCAAAATGGGTGGAGGATCTGTGTTGGACACGTGTCGGA
CACGGATTCGTCCGGACACGCTCCGGACACGTGTCCGACACGCAGTTTTGCGTGTCCTATTTTATTTATTTATTTTTTTAATTTCGGACACGCGGGGACACGGCTAGATA
CGTCCACGGACACGCTGAGTCTGAGAGAGAGAGAGAGAGAGCAAAAACCTCAAATGTCGCTGCACTTCATCGCTGCTAGTTTATCTCAAATGCTGCTGCACTTCATCGCT
GCTAGTTTATCTCAAATGCTGCTGCAATATCACTTCATCTAA
Protein sequenceShow/hide protein sequence
MRCTCEERNPNAVEICDVRTGLDWKYVRNETLKTPSFGKYAKALGNVIGSEIAEHDDYDKMEGETLRVKIRINMEESLKRGTNVKIGSMAEKTWIPITYEKLPDFCYYCG
KLGHVKMECNELGAETSKENLFGVDLRETKSSKGVYKSWKSEYKDNSSWLRGRGRGRWERNQRGDFSNQRKKGGMEEMEIIYPHNNRRETISKEDRRIEKERWREERSEE
NRDCIRRQESQEKSDYDQRGSNKEERPPTATIDVQGISSPADLPSRTNAIAQTVTDKVGEGTEKKKDDNQATDKEKSNHVEKGKSIASGENRKSPKSSPKVIKLGSSKEK
QMEASKYAEMERNLEDIGYEARTRQNGWRICVGHVSDTDSSGHAPDTCPTRSFACPILFIYFFNFGHAGTRLDTSTDTLSLREREREQKPQMSLHFIAASLSQMLLHFIA
ASLSQMLLQYHFI