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Lag0026827 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026827
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:42345371..42345685
RNA-Seq ExpressionLag0026827
SyntenyLag0026827
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7812868.1 ribonuclease H [Senna tora]6.6e-0537.23Show/hide
Query:  LDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCMYG
        ++++SN ++EEL AI  GL ++   RG + + VE DS  A+N I+     +  +  +++DIR+L   F  I F H+ R  N++ADFLAK  + G
Subjt:  LDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCMYG

KAF7819821.1 uncharacterized protein G2W53_025276 [Senna tora]5.1e-0538.37Show/hide
Query:  SNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKK
        ++P++ E  AI  GL  LA   GC  + VE D++M I+ +    V  S + AL +DI R    F  + F+ VPR CN  ADF+ +K
Subjt:  SNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKK

KAG7575844.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]3.0e-0536.36Show/hide
Query:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCMYGEG
        S+++   S+ L  E RA++ GL++ AL+RG     ++ DS++ ++ +    VV +E+  L+ DIR LV LF+ + F+ VPR  N  AD LAK  +   G
Subjt:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCMYGEG

MBA0702464.1 hypothetical protein [Gossypium aridum]3.9e-0538.96Show/hide
Query:  ELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFL
        EL A+ E + NL  ++  LK++ EYD    +N + R  V +S +   +++I +L+D FS + F   PRNCN+AAD+L
Subjt:  ELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.7e-0538.54Show/hide
Query:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK
        +AA+SI +    +PL+ E+R I+EGL   A +     ++VE DS +AI  I  +     + +  V +I+ L   F+ I FSH  R CNRAA  LAK
Subjt:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK

TrEMBL top hitse value%identityAlignment
A0A444WX62 RNase H domain-containing protein5.4e-0539.56Show/hide
Query:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLA
        S+ LD +++  M EL  +V GL NLA   GC K+KV+ DS  A+  +    V       LV +I  LV     ++FSH+ R  NRAAD +A
Subjt:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLA

A0A6J1DX30 uncharacterized protein LOC1110248748.4e-0638.54Show/hide
Query:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK
        +AA+SI +    +PL+ E+R I+EGL   A +     ++VE DS +AI  I  +     + +  V +I+ L   F+ I FSH  R CNRAA  LAK
Subjt:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK

A0A6P4BN11 heat shock 70 kDa protein7.1e-0539.56Show/hide
Query:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLA
        S+ LD +++  M EL  +V GL NLA   GC K+KV+ DS  A+  +    V       LV +I  LV     ++FSH+ R  NRAAD +A
Subjt:  SIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLA

A0A7J6GME9 Uncharacterized protein7.1e-0538.54Show/hide
Query:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK
        + A + ++   S+ L+ E  AI+ GL  LALSR  L+ +V  D+   IN I  K    SE   +V++I +  D F  +DF  VPR+CN+ A+ LAK
Subjt:  MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAK

A0A7J8YTN4 RNase H domain-containing protein (Fragment)1.9e-0538.96Show/hide
Query:  ELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFL
        EL A+ E + NL  ++  LK++ EYD    +N + R  V +S +   +++I +L+D FS + F   PRNCN+AAD+L
Subjt:  ELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-0538.37Show/hide
Query:  PLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCM
        PLM E  A+   L   A S G  K+ +  DSQ  I  I  +    +E   ++ DI  L   F+D+ FS VPR+ NR AD LAK  +
Subjt:  PLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTTCTTCGATTTACCTGGACATTTCATCGAATCCTCTCATGGAGGAGCTTAGAGCGATCGTTGAAGGATTGAATAATCTCGCTCTCTCGAGAGGTTGCTTGAA
GATCAAAGTCGAATATGATTCCCAAATGGCAATTAATTTCATTGCCAGAAAATATGTGGTTTGGAGTGAAGTGGAGGCATTAGTCAAAGACATCCGGAGGCTGGTGGATT
TGTTTAGTGATATTGATTTTAGCCATGTCCCTAGAAATTGCAATAGAGCTGCTGATTTTTTAGCAAAAAAATGCATGTATGGTGAAGGATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTTCTTCGATTTACCTGGACATTTCATCGAATCCTCTCATGGAGGAGCTTAGAGCGATCGTTGAAGGATTGAATAATCTCGCTCTCTCGAGAGGTTGCTTGAA
GATCAAAGTCGAATATGATTCCCAAATGGCAATTAATTTCATTGCCAGAAAATATGTGGTTTGGAGTGAAGTGGAGGCATTAGTCAAAGACATCCGGAGGCTGGTGGATT
TGTTTAGTGATATTGATTTTAGCCATGTCCCTAGAAATTGCAATAGAGCTGCTGATTTTTTAGCAAAAAAATGCATGTATGGTGAAGGATTCTGA
Protein sequenceShow/hide protein sequence
MAASSIYLDISSNPLMEELRAIVEGLNNLALSRGCLKIKVEYDSQMAINFIARKYVVWSEVEALVKDIRRLVDLFSDIDFSHVPRNCNRAADFLAKKCMYGEGF