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Lag0026840 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026840
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:42438929..42441841
RNA-Seq ExpressionLag0026840
SyntenyLag0026840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0635.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0635.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
TYK13741.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0635.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0635.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]1.2e-0635.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein5.8e-0735.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein5.8e-0735.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein5.8e-0735.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein5.8e-0735.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein5.8e-0735.71Show/hide
Query:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
        ++++ I+ N + ++LW +W +RN R+F  K   +A++WED  +L   W+S   +F NY + S+ALN  +F
Subjt:  SQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAACTACTAGCTATTCTTGAAGGTGTTCAAATGGCAAGAGCTCTTGGATGTGCCAAGATCATAGTGGAATATCCAACAGTATTCAAGCAGTTAATTTGGCCTCA
AGACGTACCGAATCGTGGAATGAGTCCCTCGCAGTCCCTTCGCTCAGATCTGGAAGCCCGTCGCTCACAGCTCGCCCACACCGCTCAGATCTGGAAGTTCGTCGCTCACA
ACTCGCCCACACCCGCCCTCATATCTGTGCGAAGAAGAAGGAGGCAATGGCTGGGCATTCGATCTGGCGTTCAATCTGGGCGGAGGGCATTCGATCGGGGCATTCGATTT
GGGCGGAGGGTGGAACGAAATCGAATGAAGACGGAAGGCGTTCGATCTGGGTTCGTGGAACGAAACCAACTGAAGAGGGAGGTTTCCGGCGAGGAAGGTCCTCCCTCCTC
CGATTCTGGCCCTCCGACCCCTCCCTCCCTCTTTTGTTTTTCTAAAAAAATACTGAAATTTTTGGAGAAGGAAGAAAGTGGAGAAGAAGAAAGGAAGAGAAGAAGAAAAA
AAAAAAAAAAAAAAAACGCCGGCGCCGGCGAGCAACGGCCTGCGGCTACCGGCGGTAGGGTTGGGGAAGATTTGGGGAAGATGAAGGGAAGGATGTTGGAATCCCTTTGC
ATGTTGGTTGCTTTTGTGAGGAATTTTGCTCTCTCCCAGCGAGACACTATAATTCTTAATATTTTCTTTGCTTCGCTCTGGATCGTCTGGAAGGATCGGAACAACCGTGT
TTTTCAAGAGAAGGTCAGCAATTTAGCCCAATTGTGGGAGGATACTATTTCTCTTGTTGCATTTTGGTCCTCTAATTGTAAGATTTTCGAGAATTATGCCTCGGTTTCCA
TGGCTCTCAATTGGAAGTCTTTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAACTACTAGCTATTCTTGAAGGTGTTCAAATGGCAAGAGCTCTTGGATGTGCCAAGATCATAGTGGAATATCCAACAGTATTCAAGCAGTTAATTTGGCCTCA
AGACGTACCGAATCGTGGAATGAGTCCCTCGCAGTCCCTTCGCTCAGATCTGGAAGCCCGTCGCTCACAGCTCGCCCACACCGCTCAGATCTGGAAGTTCGTCGCTCACA
ACTCGCCCACACCCGCCCTCATATCTGTGCGAAGAAGAAGGAGGCAATGGCTGGGCATTCGATCTGGCGTTCAATCTGGGCGGAGGGCATTCGATCGGGGCATTCGATTT
GGGCGGAGGGTGGAACGAAATCGAATGAAGACGGAAGGCGTTCGATCTGGGTTCGTGGAACGAAACCAACTGAAGAGGGAGGTTTCCGGCGAGGAAGGTCCTCCCTCCTC
CGATTCTGGCCCTCCGACCCCTCCCTCCCTCTTTTGTTTTTCTAAAAAAATACTGAAATTTTTGGAGAAGGAAGAAAGTGGAGAAGAAGAAAGGAAGAGAAGAAGAAAAA
AAAAAAAAAAAAAAAACGCCGGCGCCGGCGAGCAACGGCCTGCGGCTACCGGCGGTAGGGTTGGGGAAGATTTGGGGAAGATGAAGGGAAGGATGTTGGAATCCCTTTGC
ATGTTGGTTGCTTTTGTGAGGAATTTTGCTCTCTCCCAGCGAGACACTATAATTCTTAATATTTTCTTTGCTTCGCTCTGGATCGTCTGGAAGGATCGGAACAACCGTGT
TTTTCAAGAGAAGGTCAGCAATTTAGCCCAATTGTGGGAGGATACTATTTCTCTTGTTGCATTTTGGTCCTCTAATTGTAAGATTTTCGAGAATTATGCCTCGGTTTCCA
TGGCTCTCAATTGGAAGTCTTTTTTGTAG
Protein sequenceShow/hide protein sequence
MVELLAILEGVQMARALGCAKIIVEYPTVFKQLIWPQDVPNRGMSPSQSLRSDLEARRSQLAHTAQIWKFVAHNSPTPALISVRRRRRQWLGIRSGVQSGRRAFDRGIRF
GRRVERNRMKTEGVRSGFVERNQLKREVSGEEGPPSSDSGPPTPPSLFCFSKKILKFLEKEESGEEERKRRRKKKKKKNAGAGEQRPAATGGRVGEDLGKMKGRMLESLC
MLVAFVRNFALSQRDTIILNIFFASLWIVWKDRNNRVFQEKVSNLAQLWEDTISLVAFWSSNCKIFENYASVSMALNWKSFL