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Lag0026860 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026860
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:42636408..42636852
RNA-Seq ExpressionLag0026860
SyntenyLag0026860
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]9.4e-0637.8Show/hide
Query:  VVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLEDLS
        +++RD  GQV+ +  +  EHV   D AE LA V+GL+ A++ G   I++ETDS R++ +  RD++ LS    +I  V   L+
Subjt:  VVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLEDLS

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105334.6e-0637.8Show/hide
Query:  VVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLEDLS
        +++RD  GQV+ +  +  EHV   D AE LA V+GL+ A++ G   I++ETDS R++ +  RD++ LS    +I  V   L+
Subjt:  VVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLEDLS

A0A7J8WTB0 RNase H domain-containing protein7.3e-0436.36Show/hide
Query:  LGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLE
        L  RK  +RV++RD  GQ+M A   +   +  + +A+ LAVV GL+ A++MGF ++++E+DS  V Q       +LS +  +I E  E
Subjt:  LGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLE

A0A7J9KXJ6 RNase H domain-containing protein (Fragment)7.3e-0436.36Show/hide
Query:  LGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLE
        L  RK  +RV++RD  GQ+M A   +   +  + +A+ LAVV GL+ A++MGF ++++E+DS  V Q       +LS +  +I E  E
Subjt:  LGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEVLE

B9SUM8 RNase H domain-containing protein9.5e-0431.91Show/hide
Query:  EARSRLGVRKTGTRVVVRDRMGQVMVATIEVHEHVGY---SDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEV
        E  +   ++ TG  V++RD++GQVM++    H+H+ Y    ++AE LA + GL  A D GF+  V+E DS+ V Q  +    + S   +++ ++
Subjt:  EARSRLGVRKTGTRVVVRDRMGQVMVATIEVHEHVGY---SDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELSYLCVVISEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCAAAGTGGGCTACTAGTTATTTGGCTGCATTCCGATTGGCTAACGGGAGGCAGTCGGGGGGGGGGGGGAGGTGGTGAGGCAAGGTCGCGATTGGGTGTGAG
GAAGACAGGGACGAGGGTGGTGGTTCGAGATCGTATGGGCCAAGTGATGGTAGCGACTATCGAGGTGCACGAGCATGTGGGCTATTCAGATATGGCAGAGGGACTAGCTG
TGGTGGATGGTCTGAAGCCGGCGGTAGATATGGGGTTTTGGGCGATAGTTGTGGAGACGGATTCATGGAGAGTATTCCAGATTGCTAGGCGGGACCAAGATGAGTTATCA
TACTTGTGCGTGGTGATTTCTGAGGTGTTGGAGGACCTGTCGGAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTGCAAAGTGGGCTACTAGTTATTTGGCTGCATTCCGATTGGCTAACGGGAGGCAGTCGGGGGGGGGGGGGAGGTGGTGAGGCAAGGTCGCGATTGGGTGTGAG
GAAGACAGGGACGAGGGTGGTGGTTCGAGATCGTATGGGCCAAGTGATGGTAGCGACTATCGAGGTGCACGAGCATGTGGGCTATTCAGATATGGCAGAGGGACTAGCTG
TGGTGGATGGTCTGAAGCCGGCGGTAGATATGGGGTTTTGGGCGATAGTTGTGGAGACGGATTCATGGAGAGTATTCCAGATTGCTAGGCGGGACCAAGATGAGTTATCA
TACTTGTGCGTGGTGATTTCTGAGGTGTTGGAGGACCTGTCGGAAGGTTGA
Protein sequenceShow/hide protein sequence
MRLQSGLLVIWLHSDWLTGGSRGGGGGGEARSRLGVRKTGTRVVVRDRMGQVMVATIEVHEHVGYSDMAEGLAVVDGLKPAVDMGFWAIVVETDSWRVFQIARRDQDELS
YLCVVISEVLEDLSEG