; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0026898 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026898
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationchr10:43069729..43070713
RNA-Seq ExpressionLag0026898
SyntenyLag0026898
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028115.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]2.9e-5069.64Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDHKFGIWIMPLQFIS
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD +  I +       
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDHKFGIWIMPLQFIS

Query:  IMKYKLRIGYLIHRPSINYASLLMGSSNPCLSDIQARHSEGSSSTFASRDTLSRR--CFLHVLPKLPR
             L I   IH PSINY SLLMGSSNPCLSD QARHS           +   +   FLHVL KL R
Subjt:  IMKYKLRIGYLIHRPSINYASLLMGSSNPCLSDIQARHSEGSSSTFASRDTLSRR--CFLHVLPKLPR

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]2.2e-3794.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]3.4e-3894.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.2e-3794.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.7e-3793.02Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIY KSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B1.1e-3794.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1F9M2 replication protein A 14 kDa subunit B-like4.0e-3793.02Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTDD+QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1FQS1 replication protein A 14 kDa subunit B-like1.6e-3894.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1J6J3 replication protein A 14 kDa subunit B-like1.8e-3793.02Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLR++VGRRVRAV+QVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1L034 replication protein A 14 kDa subunit B-like1.6e-3894.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAV+QVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B4.0e-2663.95Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+P+ FVN  LLR ++G++VRAV+QV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Q9LXK1 Replication protein A 14 kDa subunit A4.1e-2358.62Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR V+QV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Q9SDK9 Replication protein A 14 kDa subunit2.3e-2153.49Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS P+ FVN E+L++ VGRRVR VVQ Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.9e-2458.62Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR V+QV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.9e-2458.62Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR V+QV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein2.8e-2763.95Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+P+ FVN  LLR ++G++VRAV+QV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCGGTTTTTGTCAATGCTGAGCTTTTACGGCTCCATGTTGGAAGAAGAGTTCGGGCAGTGGTTCAGGTACAATCCGAAGGCAGTGGAGTTAT
ATACGGTAAATCGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTGTGGACCAATTTCGGCGATTCATTTGATCACAAGTTTGGAATCTGGATTATGCCTTTGCAGTTTATCTCAATAATGAAATATAAGCTGCGAATTGGTTAT
TTGATTCATCGACCTTCAATCAACTATGCCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGATATTCAAGCCAGACATTCAGAAGGCTCGAGCTCTACCTTCGC
CTCCCGTGACACGCTAAGTCGCCGATGTTTTCTTCATGTTCTTCCGAAGCTTCCAAGATTTATCATTCATACGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCGGTTTTTGTCAATGCTGAGCTTTTACGGCTCCATGTTGGAAGAAGAGTTCGGGCAGTGGTTCAGGTACAATCCGAAGGCAGTGGAGTTAT
ATACGGTAAATCGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTGTGGACCAATTTCGGCGATTCATTTGATCACAAGTTTGGAATCTGGATTATGCCTTTGCAGTTTATCTCAATAATGAAATATAAGCTGCGAATTGGTTAT
TTGATTCATCGACCTTCAATCAACTATGCCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGATATTCAAGCCAGACATTCAGAAGGCTCGAGCTCTACCTTCGC
CTCCCGTGACACGCTAAGTCGCCGATGTTTTCTTCATGTTCTTCCGAAGCTTCCAAGATTTATCATTCATACGGTATGA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLHVGRRVRAVVQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDHKFGIWIMPLQFISIMKYKLRIGY
LIHRPSINYASLLMGSSNPCLSDIQARHSEGSSSTFASRDTLSRRCFLHVLPKLPRFIIHTV