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Lag0026929 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026929
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:43371603..43372390
RNA-Seq ExpressionLag0026929
SyntenyLag0026929
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.8e-0933.87Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY-------------------PLVVESDSLEIVNLLNRNSEDLSEIAILAEEISELA
        WKLN +AAW  +   GG+GW +RD    +     R+ + E +  Y                   P+ +ESDSLE ++LL+R  +D +EI  L EEI ++ 
Subjt:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY-------------------PLVVESDSLEIVNLLNRNSEDLSEIAILAEEISELA

Query:  LSIDVQSFSKCSRSCNILAHNLAR
          +++ S    SR  N +AH LAR
Subjt:  LSIDVQSFSKCSRSCNILAHNLAR

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.7e-1035.56Show/hide
Query:  GSSQGREGSGLDPTHMATDPDR--WKLNVDAAWFDELKVGGLGWSIRDSSAG------LKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEI
        G +   E   L  T   T P +  WKLNVDA W D L  GGLGW +RDS         LK L   L    +     + +ESD LE+VN++N++S  L+E+
Subjt:  GSSQGREGSGLDPTHMATDPDR--WKLNVDAAWFDELKVGGLGWSIRDSSAG------LKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEI

Query:  AILAEEISELALSIDVQSFSKCSRSCNILAHNLAR
        +++ E+I +   S+ ++ F       N +AH +AR
Subjt:  AILAEEISELALSIDVQSFSKCSRSCNILAHNLAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.8e-0635.94Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIR-----------------------DSSAGLKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAILAEEI
        W LN DA+W D    GG+GW IR                       ++SA L+ L   L    V R  PL +E+DS E+ +LLNR  EDL++   + EEI
Subjt:  WKLNVDAAWFDELKVGGLGWSIR-----------------------DSSAGLKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAILAEEI

Query:  SELALSIDVQSFSKCSRSCNILAHNLAR
          L  S ++ +F+K  R  N  AH+LA+
Subjt:  SELALSIDVQSFSKCSRSCNILAHNLAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.2e-0933.33Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY---------------------------PLVVESDSLEIVNLLNRNSEDLSEIAIL
        WKLN DAAW  +   GG+GW +RD    +   D R+ + E +  Y                           P+ +ESDSLE ++LL+R  +D +EI  L
Subjt:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY---------------------------PLVVESDSLEIVNLLNRNSEDLSEIAIL

Query:  AEEISELALSIDVQSFSKCSRSCNILAHNLAR
         EEI ++   + + S    SR  N +AH+LAR
Subjt:  AEEISELALSIDVQSFSKCSRSCNILAHNLAR

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]1.6e-0533.55Show/hide
Query:  GSSQGREGSGL-----DPTHMATDPDR---WKLNVDAAWFDELKVGGLGWSIRD-----SSAGLKDLDLRLKQDEVSRAYP---------------LVVE
        G    R+G GL      PT +   P +   WKLN+DA+W  ++   GLGW   D       AGLK + LR ++  +  A                 ++VE
Subjt:  GSSQGREGSGL-----DPTHMATDPDR---WKLNVDAAWFDELKVGGLGWSIRD-----SSAGLKDLDLRLKQDEVSRAYP---------------LVVE

Query:  SDSL-EIVNLLNRNSEDLSEIAILAEEISELALSIDVQSFSKCSRSCNILAH
        SD L E++NLLN +  DLSE++  +EE  +   ++ V SFS   R  N+LA+
Subjt:  SDSL-EIVNLLNRNSEDLSEIAILAEEISELALSIDVQSFSKCSRSCNILAH

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.3e-0933.87Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY-------------------PLVVESDSLEIVNLLNRNSEDLSEIAILAEEISELA
        WKLN +AAW  +   GG+GW +RD    +     R+ + E +  Y                   P+ +ESDSLE ++LL+R  +D +EI  L EEI ++ 
Subjt:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY-------------------PLVVESDSLEIVNLLNRNSEDLSEIAILAEEISELA

Query:  LSIDVQSFSKCSRSCNILAHNLAR
          +++ S    SR  N +AH LAR
Subjt:  LSIDVQSFSKCSRSCNILAHNLAR

A0A6J1D4B6 uncharacterized protein LOC1110171811.3e-1035.56Show/hide
Query:  GSSQGREGSGLDPTHMATDPDR--WKLNVDAAWFDELKVGGLGWSIRDSSAG------LKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEI
        G +   E   L  T   T P +  WKLNVDA W D L  GGLGW +RDS         LK L   L    +     + +ESD LE+VN++N++S  L+E+
Subjt:  GSSQGREGSGLDPTHMATDPDR--WKLNVDAAWFDELKVGGLGWSIRDSSAG------LKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEI

Query:  AILAEEISELALSIDVQSFSKCSRSCNILAHNLAR
        +++ E+I +   S+ ++ F       N +AH +AR
Subjt:  AILAEEISELALSIDVQSFSKCSRSCNILAHNLAR

A0A6J1D5W1 uncharacterized protein LOC1110173291.4e-0428.15Show/hide
Query:  HMATDPDRWKLNVDAAWFDELKVGGLGWSIRDSSAGLKD-------------------LDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAIL
        H++ D + WKLN DAAW     VGGLGW IR+    +K                    + L ++    S +  L++ES+SLE ++L+    ++++EI  L
Subjt:  HMATDPDRWKLNVDAAWFDELKVGGLGWSIRDSSAGLKD-------------------LDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAIL

Query:  AEEISELALSIDVQSFSKCSRSCNILAHNLARPGA
         ++I        ++ F    R  N +A  +A   A
Subjt:  AEEISELALSIDVQSFSKCSRSCNILAHNLARPGA

A0A6J1DNV9 uncharacterized protein LOC1110224038.9e-0735.94Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIR-----------------------DSSAGLKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAILAEEI
        W LN DA+W D    GG+GW IR                       ++SA L+ L   L    V R  PL +E+DS E+ +LLNR  EDL++   + EEI
Subjt:  WKLNVDAAWFDELKVGGLGWSIR-----------------------DSSAGLKDLDLRLKQDEVSRAYPLVVESDSLEIVNLLNRNSEDLSEIAILAEEI

Query:  SELALSIDVQSFSKCSRSCNILAHNLAR
          L  S ++ +F+K  R  N  AH+LA+
Subjt:  SELALSIDVQSFSKCSRSCNILAHNLAR

A0A6J1DSV1 uncharacterized protein LOC1110236082.5e-0933.33Show/hide
Query:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY---------------------------PLVVESDSLEIVNLLNRNSEDLSEIAIL
        WKLN DAAW  +   GG+GW +RD    +   D R+ + E +  Y                           P+ +ESDSLE ++LL+R  +D +EI  L
Subjt:  WKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAY---------------------------PLVVESDSLEIVNLLNRNSEDLSEIAIL

Query:  AEEISELALSIDVQSFSKCSRSCNILAHNLAR
         EEI ++   + + S    SR  N +AH+LAR
Subjt:  AEEISELALSIDVQSFSKCSRSCNILAHNLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATCCAAGGACTAAGCAGGACAACGCGATACCAGTCGAAGGAGACAACCAGAAAACCGGCCTCGGAGGAACAACAGGCCAGAGGGTCGAGCCAAGGTCGGGAGGG
ATCGGGCCTTGACCCGACCCATATGGCTACGGACCCTGATCGGTGGAAGCTTAACGTTGACGCTGCCTGGTTCGACGAGCTGAAGGTTGGTGGTTTAGGCTGGTCCATCC
GTGACTCTTCAGCTGGGTTAAAAGATTTGGATTTGCGTCTGAAGCAGGATGAAGTCAGTAGGGCTTACCCTCTTGTAGTGGAGTCCGATTCTTTGGAGATTGTGAATCTT
CTCAACCGAAATTCTGAAGATCTCTCGGAAATCGCCATTTTGGCTGAGGAAATTTCCGAATTGGCGTTGTCTATAGATGTCCAATCTTTCTCCAAATGCTCTAGATCTTG
TAATATTTTGGCGCACAACCTTGCGCGCCCGGGCGCCTCTCATGGGCCGTTTTCTTTTTTGTCGATCGTCGGAGTCCCCTATCGTCGGATGTCGAGGAAAGGGATATATG
TTTCCCTTATTGGTTCTCTGTTATTTTGGAAGAGGAGTTTGGTGTTTCTGCCGCTCCTGTTATTTAATGAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATCCAAGGACTAAGCAGGACAACGCGATACCAGTCGAAGGAGACAACCAGAAAACCGGCCTCGGAGGAACAACAGGCCAGAGGGTCGAGCCAAGGTCGGGAGGG
ATCGGGCCTTGACCCGACCCATATGGCTACGGACCCTGATCGGTGGAAGCTTAACGTTGACGCTGCCTGGTTCGACGAGCTGAAGGTTGGTGGTTTAGGCTGGTCCATCC
GTGACTCTTCAGCTGGGTTAAAAGATTTGGATTTGCGTCTGAAGCAGGATGAAGTCAGTAGGGCTTACCCTCTTGTAGTGGAGTCCGATTCTTTGGAGATTGTGAATCTT
CTCAACCGAAATTCTGAAGATCTCTCGGAAATCGCCATTTTGGCTGAGGAAATTTCCGAATTGGCGTTGTCTATAGATGTCCAATCTTTCTCCAAATGCTCTAGATCTTG
TAATATTTTGGCGCACAACCTTGCGCGCCCGGGCGCCTCTCATGGGCCGTTTTCTTTTTTGTCGATCGTCGGAGTCCCCTATCGTCGGATGTCGAGGAAAGGGATATATG
TTTCCCTTATTGGTTCTCTGTTATTTTGGAAGAGGAGTTTGGTGTTTCTGCCGCTCCTGTTATTTAATGAATTTTGA
Protein sequenceShow/hide protein sequence
MRIQGLSRTTRYQSKETTRKPASEEQQARGSSQGREGSGLDPTHMATDPDRWKLNVDAAWFDELKVGGLGWSIRDSSAGLKDLDLRLKQDEVSRAYPLVVESDSLEIVNL
LNRNSEDLSEIAILAEEISELALSIDVQSFSKCSRSCNILAHNLARPGASHGPFSFLSIVGVPYRRMSRKGIYVSLIGSLLFWKRSLVFLPLLLFNEF