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Lag0026932 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0026932
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:43393879..43397037
RNA-Seq ExpressionLag0026932
SyntenyLag0026932
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU49859.1 hypothetical protein TSUD_374420 [Trifolium subterraneum]5.0e-0844.29Show/hide
Query:  DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL
        ++ SGQ +N+ KS VYFS NV+   ++ +  LLG+  V   GKYLG+PS   R R   FK IK R+W+ +
Subjt:  DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL

XP_027109435.1 uncharacterized protein LOC113729327 [Coffea arabica]1.3e-0828.74Show/hide
Query:  FSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG---VTLIHEPQSPSLQGYQR
        F  +++  +  SGQ VN DKS + FS N     R+VI  LL M +V+   KYLG+P    R +   F  IK RVWQ LQ     +L       +  GY+ 
Subjt:  FSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG---VTLIHEPQSPSLQGYQR

Query:  SLRQPGIFNDCANQDKLLSVLERFCLGKRSLDQRYAKRIGNDFISPTM-GWDPNKLKGVVNQDDANIIATIPIS
        S    GI                   G+++L+     ++G+D I   +  W+   +  +  +++A++I ++P+S
Subjt:  SLRQPGIFNDCANQDKLLSVLERFCLGKRSLDQRYAKRIGNDFISPTM-GWDPNKLKGVVNQDDANIIATIPIS

XP_030483193.1 uncharacterized protein LOC115699787 [Cannabis sativa]5.0e-0846.38Show/hide
Query:  LVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL
        L SGQ VN  KSA++FSPN     ++ +  +LG+ + DN+ KYLG+P  F R + D F  IK RVW  L
Subjt:  LVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL

XP_030487384.1 uncharacterized protein LOC115704310 [Cannabis sativa]1.0e-0840.22Show/hide
Query:  EVVRVECSWPPWFSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG
        E    EC    WF  ++E   + SGQ VN  KS + F  NV+   ++ +  L+G+ +VDN GKYLG+PS   R +   F+ IK RVW  L+G
Subjt:  EVVRVECSWPPWFSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG

XP_030509135.1 uncharacterized protein LOC115723805 [Cannabis sativa]5.0e-0850.75Show/hide
Query:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL
        SGQ VN  KSA+YFSPN   A +  I  LLG+ + D + KYLG+P AF R + D F  I  RVW  L
Subjt:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL

TrEMBL top hitse value%identityAlignment
A0A2Z6PRG6 Uncharacterized protein2.4e-0844.29Show/hide
Query:  DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL
        ++ SGQ +N+ KS VYFS NV+   ++ +  LLG+  V   GKYLG+PS   R R   FK IK R+W+ +
Subjt:  DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL

A0A5B7AER2 Reverse transcriptase domain-containing protein6.4e-0950.72Show/hide
Query:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG
        SGQ++N DKS++ FSPNV    R VI  +LG+S+     KYLG+PS   R +M  F  IK RVW+ LQG
Subjt:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG

A0A6P6W3D0 uncharacterized protein LOC1137293276.4e-0928.74Show/hide
Query:  FSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG---VTLIHEPQSPSLQGYQR
        F  +++  +  SGQ VN DKS + FS N     R+VI  LL M +V+   KYLG+P    R +   F  IK RVWQ LQ     +L       +  GY+ 
Subjt:  FSSIVE--DLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQG---VTLIHEPQSPSLQGYQR

Query:  SLRQPGIFNDCANQDKLLSVLERFCLGKRSLDQRYAKRIGNDFISPTM-GWDPNKLKGVVNQDDANIIATIPIS
        S    GI                   G+++L+     ++G+D I   +  W+   +  +  +++A++I ++P+S
Subjt:  SLRQPGIFNDCANQDKLLSVLERFCLGKRSLDQRYAKRIGNDFISPTM-GWDPNKLKGVVNQDDANIIATIPIS

A0A803Q1A0 Uncharacterized protein3.7e-0926.38Show/hide
Query:  VSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL---QGVTLIHEPQSPSLQGYQRSLRQPGIFND
        +SGQ+VN  KS++ FSPN ++ ++++I D + + M ++L KYLG+P  F R +   F  +K R+W  L    G  L    +   L+   +++    I  +
Subjt:  VSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL---QGVTLIHEPQSPSLQGYQRSLRQPGIFND

Query:  CANQDKLLSVLERFCLGKRSLDQRYAKRIG--NDFISPTMGWDPNKLKGVVNQDDANIIATIP
         AN     S+ + +    R    +    +   +  + P   W+   L+    QD  N I ++P
Subjt:  CANQDKLLSVLERFCLGKRSLDQRYAKRIG--NDFISPTMGWDPNKLKGVVNQDDANIIATIP

A0A803Q1S7 Uncharacterized protein2.4e-0850.75Show/hide
Query:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL
        SGQ VN  KSA+YFSPN   A +  I  LLG+ + D + KYLG+P AF R + D F  I  RVW  L
Subjt:  SGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTGAGCTTCGGACAGCTCTGCGAGTTCAGATCTCGTGGGTCAGCTTCGGCGTGGGTCAGTTCGCGAGCTTCGACAGTTCGTGGGCATGAGCTTCGGTCGATCTC
TCTCTCTAACTCTCGGACTTTCTCTCCCTCTCGTGTCTGTGTCCGGCGTCAAAACGGGGAGGAGGGAGTTCCTCCTCCCTCCACCGTTTCAGATCTGAGACGGTGGAGGG
AGGAGGAACTCCTTCCTCCTCGTTCCGACGCCGGAAACGATTTATCAAAACTCAAGATAAAGGTAGAAAATGCTGCCTATTATGAGAATCAATGGAAGATCAACGTCGAC
GCAGCTTGGTTCGACGAAGCCGGTTATGGAGGAGTGGGGTGGATTATTCGAGACTCCGAAGTCTACTCGGAATTTCGAGATCACGATGTAGTGGTCGAGTCGGATGCGAC
TGAAATTGTGAAGCTAATCAATCGGGAATCGGTGGATCTCTCGGAGGTCTCTATCGTCATCGAGGAGATCCGTGTTTTGGCGCCGCGAGCTAATGTGGTGGCCTTCAGAT
TTTGTCAAAGATCCTCTAATTTTTTGGCGCACTCTCTTGCGCGCGCAGTGGCGAAAAACAACGATTGTTCTTATTTCTGTTTTGATCCTTCTCAGGTCTCGAGAATGGAT
GAAGTTGTTAGGGTGGAGTGTTCTTGGCCCCCCTGGTTTTCCTCTATTGTGGAGGATCTGGTGTCTGGCCAGAAGGTTAATATTGATAAATCTGCTGTATATTTTTCCCC
AAATGTGGCTATTGCATTTCGTTCTGTAATTGTGGATCTATTGGGTATGTCCATGGTAGACAACCTTGGAAAATATTTGGGAGTTCCTTCAGCGTTTAGCAGAAGAAGGA
TGGATGATTTTAAGGATATCAAGCAAAGAGTGTGGCAGTCTCTTCAAGGTGTGACACTTATACATGAACCCCAATCTCCTAGCCTCCAAGGTTATCAAAGGTCGTTACGC
CAACCAGGAATCTTTAATGATTGCGCTAATCAAGACAAATTGCTCAGTGTTCTGGAGAGGTTTTGTTTGGGCAAGAGATCTCTTGATCAGCGGTATGCAAAGAGGATTGG
AAATGACTTCATTAGTCCAACTATGGGTTGGGATCCGAACAAATTAAAAGGAGTGGTGAATCAAGATGATGCAAACATCATAGCGACCATTCCAATTAGTACATGCCACG
CACGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTGAGCTTCGGACAGCTCTGCGAGTTCAGATCTCGTGGGTCAGCTTCGGCGTGGGTCAGTTCGCGAGCTTCGACAGTTCGTGGGCATGAGCTTCGGTCGATCTC
TCTCTCTAACTCTCGGACTTTCTCTCCCTCTCGTGTCTGTGTCCGGCGTCAAAACGGGGAGGAGGGAGTTCCTCCTCCCTCCACCGTTTCAGATCTGAGACGGTGGAGGG
AGGAGGAACTCCTTCCTCCTCGTTCCGACGCCGGAAACGATTTATCAAAACTCAAGATAAAGGTAGAAAATGCTGCCTATTATGAGAATCAATGGAAGATCAACGTCGAC
GCAGCTTGGTTCGACGAAGCCGGTTATGGAGGAGTGGGGTGGATTATTCGAGACTCCGAAGTCTACTCGGAATTTCGAGATCACGATGTAGTGGTCGAGTCGGATGCGAC
TGAAATTGTGAAGCTAATCAATCGGGAATCGGTGGATCTCTCGGAGGTCTCTATCGTCATCGAGGAGATCCGTGTTTTGGCGCCGCGAGCTAATGTGGTGGCCTTCAGAT
TTTGTCAAAGATCCTCTAATTTTTTGGCGCACTCTCTTGCGCGCGCAGTGGCGAAAAACAACGATTGTTCTTATTTCTGTTTTGATCCTTCTCAGGTCTCGAGAATGGAT
GAAGTTGTTAGGGTGGAGTGTTCTTGGCCCCCCTGGTTTTCCTCTATTGTGGAGGATCTGGTGTCTGGCCAGAAGGTTAATATTGATAAATCTGCTGTATATTTTTCCCC
AAATGTGGCTATTGCATTTCGTTCTGTAATTGTGGATCTATTGGGTATGTCCATGGTAGACAACCTTGGAAAATATTTGGGAGTTCCTTCAGCGTTTAGCAGAAGAAGGA
TGGATGATTTTAAGGATATCAAGCAAAGAGTGTGGCAGTCTCTTCAAGGTGTGACACTTATACATGAACCCCAATCTCCTAGCCTCCAAGGTTATCAAAGGTCGTTACGC
CAACCAGGAATCTTTAATGATTGCGCTAATCAAGACAAATTGCTCAGTGTTCTGGAGAGGTTTTGTTTGGGCAAGAGATCTCTTGATCAGCGGTATGCAAAGAGGATTGG
AAATGACTTCATTAGTCCAACTATGGGTTGGGATCCGAACAAATTAAAAGGAGTGGTGAATCAAGATGATGCAAACATCATAGCGACCATTCCAATTAGTACATGCCACG
CACGCTGA
Protein sequenceShow/hide protein sequence
MGVSFGQLCEFRSRGSASAWVSSRASTVRGHELRSISLSNSRTFSPSRVCVRRQNGEEGVPPPSTVSDLRRWREEELLPPRSDAGNDLSKLKIKVENAAYYENQWKINVD
AAWFDEAGYGGVGWIIRDSEVYSEFRDHDVVVESDATEIVKLINRESVDLSEVSIVIEEIRVLAPRANVVAFRFCQRSSNFLAHSLARAVAKNNDCSYFCFDPSQVSRMD
EVVRVECSWPPWFSSIVEDLVSGQKVNIDKSAVYFSPNVAIAFRSVIVDLLGMSMVDNLGKYLGVPSAFSRRRMDDFKDIKQRVWQSLQGVTLIHEPQSPSLQGYQRSLR
QPGIFNDCANQDKLLSVLERFCLGKRSLDQRYAKRIGNDFISPTMGWDPNKLKGVVNQDDANIIATIPISTCHAR