CuGenDBv2

Gene ID	Lag0026952
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RING-CH-type domain-containing protein
Genome location	chr10:43665285..43665737
RNA-Seq Expression	Lag0026952
Synteny	Lag0026952
Gene Ontology terms	GO:0009414 - response to water deprivation (biological process) GO:0010025 - wax biosynthetic process (biological process) GO:0010143 - cutin biosynthetic process (biological process) GO:0010345 - suberin biosynthetic process (biological process) GO:0030433 - ubiquitin-dependent ERAD pathway (biological process) GO:0042335 - cuticle development (biological process) GO:1900486 - positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway (biological process) GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588671.1 putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia]

6.9e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

KAG7015496.1 putative E3 ubiquitin ligase SUD1 [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

KAG7022458.1 putative E3 ubiquitin ligase SUD1 [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

XP_022155603.1 probable E3 ubiquitin ligase SUD1 isoform X2 [Momordica charantia]

6.9e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LL+QIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

XP_022988668.1 probable E3 ubiquitin ligase SUD1 [Cucurbita maxima]

6.9e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKZ9 Putative E3 ubiquitin ligase SUD1

4.4e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LL QIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

A0A6J1DNE4 probable E3 ubiquitin ligase SUD1 isoform X2

3.3e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LL+QIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

A0A6J1DPT0 probable E3 ubiquitin ligase SUD1 isoform X1

3.3e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LL+QIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

A0A6J1EIG5 probable E3 ubiquitin ligase SUD1

3.3e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

A0A6J1JMZ0 probable E3 ubiquitin ligase SUD1

3.3e-21

92.19

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +YVRARRVT LLSQIWKWFAIVVKSSAL SIWIFLIP+LIGLLFELLVIVPMRVPVDE+PVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

SwissProt top hits

e value

%identity

Alignment

F4JKK0 Probable E3 ubiquitin ligase SUD1

4.3e-18

71.88

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        ++V+++R + LL+QIWKW  IV KSS L +IW+F+IP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

Arabidopsis top hits

e value

%identity

Alignment

AT4G32670.1 RING/FYVE/PHD zinc finger superfamily protein

2.1e-04

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Query:  VKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        +++  LFSIWI +IP ++GLL +L++I+P +VP+ ESPV+ L
Subjt:  VKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

AT4G34100.1 RING/U-box superfamily protein

3.1e-19

71.88

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        ++V+++R + LL+QIWKW  IV KSS L +IW+F+IP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

AT4G34100.2 RING/U-box superfamily protein

3.1e-19

71.88

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Query:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL
        ++V+++R + LL+QIWKW  IV KSS L +IW+F+IP+LIGLLFELLVIVPMRVPVDESPVFLL
Subjt:  KYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

Sequences

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CDS sequence

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ATGGGTTCTTCGGGTTCGAAAAATTCCTATCGAATCGCCTCAGAACTGCTGGGATTTCCGGCAAATCCAACACGAAATTCAGAAGGTTTCTTATTGTATCGACATGATTT
GAATATGGGTAAGAATGGTTGTGATAAATATGTCAGAGCAAGGAGAGTGACATTTTTGTTGAGCCAGATATGGAAATGGTTTGCCATTGTTGTCAAGAGCTCCGCACTTT
TTTCAATATGGATCTTTCTCATTCCAATTCTGATAGGCTTGTTATTTGAGCTTCTGGTCATTGTGCCTATGCGAGTTCCAGTGGATGAAAGCCCAGTTTTCCTCTTGTAA

mRNA sequence

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Protein sequence

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MGSSGSKNSYRIASELLGFPANPTRNSEGFLLYRHDLNMGKNGCDKYVRARRVTFLLSQIWKWFAIVVKSSALFSIWIFLIPILIGLLFELLVIVPMRVPVDESPVFLL

Lag0026952 (gene) of Sponge gourd (AG-4) v1 genome