; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027133 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027133
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationchr10:45296393..45298016
RNA-Seq ExpressionLag0027133
SyntenyLag0027133
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3957296.1 hypothetical protein CMV_017676 [Castanea mollissima]3.8e-5679.86Show/hide
Query:  MAFASAVRRVLTGSSLTSSSL--HQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN
        MAF S +RRVL G S T+SS+   Q TS RFN+TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AK+ITDRA+GRSKGFGFV+YATIEEAEKARE MN
Subjt:  MAFASAVRRVLTGSSLTSSSL--HQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        AKFLDGWVIFVDPAKPREPRPPPQPQ E +E GFRTN+T+GWCG
Subjt:  AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_002274178.1 PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis vinifera]1.3e-5682.39Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+ RRVLTGSS    S  Q + +RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAK+ITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_022145577.1 organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]1.4e-6187.59Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLH----QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREE
        MAFASA RRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAK+ITDRASGRSKGFGFVTYA+IEEAEKAREE
Subjt:  MAFASAVRRVLTGSSLTSSSLH----QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

XP_034692789.1 organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia]2.9e-5682.39Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+ RRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAK+ITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_041025917.1 organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x Juglans regia]3.8e-5679.72Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAF S++RR+L+GSS  SS LH Q TS R N+TLT+PKLF+SGLSRLTTD+KLKEAFSPFGQL++AK+I DRA+GRSKGFGFVTYA+IEEAEKARE MNA
Subjt:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPQP  ES++ GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A1U8AE68 glycine-rich RNA-binding protein 6, mitochondrial7.0e-5680.42Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAF SA RR L+GSS  SS L  +L S R NSTLT PKLF+SGLSRLTTD+KLKEAFSPFG L+EAK+I DR SGRSKGFGFVTYATIE+AEKARE MNA
Subjt:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPQP+PE +E GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

A0A5B7BY51 RRM domain-containing protein1.2e-5580.42Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAFAS+ RR L GSS+ SS LH Q  S R NSTL+ PKLFVSGLSRLTTD+KLKE FS FGQL+EAK+I DRASGRSKGFGFVTYATIE+AEKARE MNA
Subjt:  MAFASAVRRVLTGSSLTSSSLH-QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        K+LDGWVIFVDPAKPREPRPPPQP+P+ +E GFRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

A0A6J1CX06 organelle RRM domain-containing protein 2, mitochondrial-like6.6e-6287.59Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLH----QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREE
        MAFASA RRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAK+ITDRASGRSKGFGFVTYA+IEEAEKAREE
Subjt:  MAFASAVRRVLTGSSLTSSSLH----QLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

A0A7N2LNA5 RRM domain-containing protein3.2e-5679.86Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLHQ--LTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN
        MAF S +RRVL G S T+SS+ Q   TS RFN+TLT+PKLF+SGLSRLTTD KL+EAFSPFGQLV+AK+ITDRA+GRSKGFGFV+YATIEEAEKARE MN
Subjt:  MAFASAVRRVLTGSSLTSSSLHQ--LTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        AKFLDGWVIFVDPAKPREPRPPPQPQ E +E GFRTN+T+GWCG
Subjt:  AKFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

D7TQ88 RRM domain-containing protein6.4e-5782.39Show/hide
Query:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+ RRVLTGSS    S  Q + +RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAK+ITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic5.3e-1653.16Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        +LFV+GLS  T++  L+ AF PFG+LVE KII DR S RSKG+ FV Y T E    A + MN + ++GW+I VD AK R
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q8L440 Organelle RRM domain-containing protein 1, chloroplastic9.0e-1651.9Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        KLF++GLS  T++  L+ AF  FG+LVE KII D+ S RSKG+ F+ Y T E A  A +EMN K ++GW+I VD AK +
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic7.3e-1851.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+I+ DR S RSKGFGFVT+A+ +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial4.9e-2257.47Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ
        LFVSGLS+ TT + L+ AF+ FG++ +AK++TDR SG SKGFGFV YAT+E++ K    M+ KFLDGWVIF + A+PRE     QPQ
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic1.6e-1744.29Show/hide
Query:  SAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL
        SA RR   G  L SS L   +SS   S+ + P  KL+VSGLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y T EEA KA + M+ KFL
Subjt:  SAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL

Query:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT
        DG VIFV+          AKPR   P PQ +P +   FRT
Subjt:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1844.29Show/hide
Query:  SAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL
        SA RR   G  L SS L   +SS   S+ + P  KL+VSGLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y T EEA KA + M+ KFL
Subjt:  SAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL

Query:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT
        DG VIFV+          AKPR   P PQ +P +   FRT
Subjt:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-4768.97Show/hide
Query:  MAFASAVRRVLTGSS--LTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN
        MAF S+ RR++ GSS  L+S SL      R  STLT+P+LFVSGLSRLTT++KL++AF+ FGQLV+A++ITDR SGRSKGFGFVTYATIE+AEKA+ EMN
Subjt:  MAFASAVRRVLTGSS--LTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPPQPQ---PESTEGFRTNKTIGWC
        AKFLDGWVIFVDPA+PREPR P Q +   P S  GF TNKTIGWC
Subjt:  AKFLDGWVIFVDPAKPREPRPPPQPQ---PESTEGFRTNKTIGWC

AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.4e-1751.9Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        KLF++GLS  T++  L+ AF  FG+LVE KII D+ S RSKG+ F+ Y T E A  A +EMN K ++GW+I VD AK +
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein5.2e-1951.52Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+I+ DR S RSKGFGFVT+A+ +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-2357.47Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ
        LFVSGLS+ TT + L+ AF+ FG++ +AK++TDR SG SKGFGFV YAT+E++ K    M+ KFLDGWVIF + A+PRE     QPQ
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGCTTCTGCCGTTCGACGAGTTCTTACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTCTCGATTCAATTCCACTCTCACAGCGCCGAA
ACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAATTATTACAGATCGAGCCTCTG
GGCGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGAC
CCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCGCTTCTGCCGTTCGACGAGTTCTTACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTCTCGATTCAATTCCACTCTCACAGCGCCGAA
ACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAATTATTACAGATCGAGCCTCTG
GGCGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGAC
CCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA
Protein sequenceShow/hide protein sequence
MAFASAVRRVLTGSSLTSSSLHQLTSSRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKIITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVD
PAKPREPRPPPQPQPESTEGFRTNKTIGWCG